Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP4Q8N3C7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP4Q8N3C7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.39■□□□□ 0.7
CLIP4Q8N3C7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
CLIP4Q8N3C7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 AC012414.1-201ENST00000556676 535 ntBASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CLIP4Q8N3C7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 AC142381.2-201ENST00000566120 298 ntBASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 LINC01521-201ENST00000504184 1943 ntBASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP4Q8N3C7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP4Q8N3C7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 AC005837.3-201ENST00000612163 286 ntBASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms