Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 AC090877.2-201ENST00000558441 1738 ntBASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28AQ8IWP9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 RAP2CP1-202ENST00000605179 643 ntBASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC28AQ8IWP9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 HSD17B1P1-201ENST00000590052 955 ntBASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 AC073314.1-201ENST00000568729 2216 ntBASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 AC020763.4-201ENST00000623414 4170 ntBASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 PCDHB18P-201ENST00000524813 2368 ntBASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28AQ8IWP9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 RARRES2P2-201ENST00000394842 485 ntBASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC28AQ8IWP9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms