Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD3Q7Z407 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD3Q7Z407 C11orf96-202ENST00000528572 1834 ntBASIC14.59□□□□□ -0.07
CSMD3Q7Z407 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CSMD3Q7Z407 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC14.59□□□□□ -0.07
CSMD3Q7Z407 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
CSMD3Q7Z407 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC14.59□□□□□ -0.07
CSMD3Q7Z407 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CSMD3Q7Z407 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.07
CSMD3Q7Z407 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 TK2-213ENST00000563369 882 ntTSL 5 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 AC124016.1-201ENST00000609552 612 ntBASIC14.58□□□□□ -0.08
CSMD3Q7Z407 AL589743.5-201ENST00000616611 1050 ntBASIC14.58□□□□□ -0.08
CSMD3Q7Z407 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 DHDH-203ENST00000522614 776 ntTSL 5 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CSMD3Q7Z407 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 SERF2-207ENST00000409614 582 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC14.57□□□□□ -0.08
CSMD3Q7Z407 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 AC133681.1-201ENST00000465482 601 ntBASIC14.56□□□□□ -0.08
CSMD3Q7Z407 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 AC008175.2-201ENST00000612840 297 ntBASIC14.56□□□□□ -0.08
CSMD3Q7Z407 MIR6786-201ENST00000616843 113 ntBASIC14.56□□□□□ -0.08
CSMD3Q7Z407 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 AL135905.2-201ENST00000584934 1404 ntBASIC14.56□□□□□ -0.08
CSMD3Q7Z407 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC14.56□□□□□ -0.08
CSMD3Q7Z407 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 GCA-201ENST00000233612 1694 ntTSL 2 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 PBX1-209ENST00000485769 834 ntTSL 2 BASIC14.55□□□□□ -0.08
CSMD3Q7Z407 OR2A1-AS1-207ENST00000486094 819 ntBASIC14.55□□□□□ -0.08
CSMD3Q7Z407 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms