Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
RNF43Q68DV7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.76■■□□□ 1.07
RNF43Q68DV7 DUX4L16-201ENST00000555130 1264 ntBASIC21.76■■□□□ 1.07
RNF43Q68DV7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF43Q68DV7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
RNF43Q68DV7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF43Q68DV7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF43Q68DV7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF43Q68DV7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.75■■□□□ 1.07
RNF43Q68DV7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF43Q68DV7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF43Q68DV7 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF43Q68DV7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
RNF43Q68DV7 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF43Q68DV7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF43Q68DV7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF43Q68DV7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF43Q68DV7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF43Q68DV7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF43Q68DV7 KRT18P6-201ENST00000555540 1265 ntBASIC21.74■■□□□ 1.07
RNF43Q68DV7 AC142086.2-201ENST00000569753 217 ntBASIC21.74■■□□□ 1.07
RNF43Q68DV7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF43Q68DV7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.74■■□□□ 1.07
RNF43Q68DV7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF43Q68DV7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF43Q68DV7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF43Q68DV7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.73■■□□□ 1.07
RNF43Q68DV7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF43Q68DV7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RNF43Q68DV7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.73■■□□□ 1.07
RNF43Q68DV7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RNF43Q68DV7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RNF43Q68DV7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.72■■□□□ 1.07
RNF43Q68DV7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.72■■□□□ 1.07
RNF43Q68DV7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.72■■□□□ 1.07
RNF43Q68DV7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.72■■□□□ 1.07
RNF43Q68DV7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.72■■□□□ 1.07
RNF43Q68DV7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.72■■□□□ 1.07
RNF43Q68DV7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
RNF43Q68DV7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF43Q68DV7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
RNF43Q68DV7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
RNF43Q68DV7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
RNF43Q68DV7 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.71■■□□□ 1.07
RNF43Q68DV7 AL121832.2-201ENST00000610979 668 ntBASIC21.71■■□□□ 1.07
RNF43Q68DV7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.71■■□□□ 1.07
RNF43Q68DV7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
RNF43Q68DV7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RNF43Q68DV7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
RNF43Q68DV7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
RNF43Q68DV7 AC026471.6-201ENST00000622954 1905 ntBASIC21.7■■□□□ 1.07
RNF43Q68DV7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.7■■□□□ 1.07
RNF43Q68DV7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.7■■□□□ 1.06
RNF43Q68DV7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RNF43Q68DV7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RNF43Q68DV7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RNF43Q68DV7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.7■■□□□ 1.06
RNF43Q68DV7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms