Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 SRD5A1P1-201ENST00000442297 786 ntBASIC18.52■□□□□ 0.56
CCDC58Q4VC31 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CCDC58Q4VC31 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC58Q4VC31 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC58Q4VC31 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC58Q4VC31 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC58Q4VC31 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC58Q4VC31 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC58Q4VC31 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 RARRES2P1-201ENST00000474487 481 ntBASIC18.51■□□□□ 0.55
CCDC58Q4VC31 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
CCDC58Q4VC31 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 MIR3621-201ENST00000580529 85 ntBASIC18.5■□□□□ 0.55
CCDC58Q4VC31 AL138724.1-201ENST00000606771 1088 ntBASIC18.5■□□□□ 0.55
CCDC58Q4VC31 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC58Q4VC31 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 PLK5-205ENST00000642079 1969 ntBASIC18.49■□□□□ 0.55
CCDC58Q4VC31 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC58Q4VC31 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC58Q4VC31 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC58Q4VC31 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC58Q4VC31 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC58Q4VC31 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC58Q4VC31 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms