Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.51■□□□□ 0.87
SRP54P61011 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.51■□□□□ 0.87
SRP54P61011 BX276092.2-201ENST00000417668 665 ntBASIC20.51■□□□□ 0.87
SRP54P61011 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.51■□□□□ 0.87
SRP54P61011 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SRP54P61011 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SRP54P61011 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 AC010980.2-201ENST00000587099 1412 ntBASIC20.51■□□□□ 0.87
SRP54P61011 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SRP54P61011 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.51■□□□□ 0.87
SRP54P61011 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SRP54P61011 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SRP54P61011 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 ECEL1P1-201ENST00000373592 1742 ntBASIC20.5■□□□□ 0.87
SRP54P61011 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.5■□□□□ 0.87
SRP54P61011 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.5■□□□□ 0.87
SRP54P61011 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SRP54P61011 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.5■□□□□ 0.87
SRP54P61011 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.5■□□□□ 0.87
SRP54P61011 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SRP54P61011 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.49■□□□□ 0.87
SRP54P61011 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.49■□□□□ 0.87
SRP54P61011 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SRP54P61011 CDV3P1-201ENST00000471403 739 ntBASIC20.49■□□□□ 0.87
SRP54P61011 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.49■□□□□ 0.87
SRP54P61011 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.49■□□□□ 0.87
SRP54P61011 AC092118.2-201ENST00000613495 667 ntBASIC20.49■□□□□ 0.87
SRP54P61011 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.49■□□□□ 0.87
SRP54P61011 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SRP54P61011 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SRP54P61011 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SRP54P61011 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.48■□□□□ 0.87
SRP54P61011 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SRP54P61011 ABHD17AP1-201ENST00000358206 933 ntBASIC20.48■□□□□ 0.87
SRP54P61011 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.48■□□□□ 0.87
SRP54P61011 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.48■□□□□ 0.87
SRP54P61011 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SRP54P61011 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SRP54P61011 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.48■□□□□ 0.87
SRP54P61011 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SRP54P61011 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SRP54P61011 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SRP54P61011 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SRP54P61011 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SRP54P61011 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SRP54P61011 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.47■□□□□ 0.87
SRP54P61011 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.47■□□□□ 0.87
SRP54P61011 FAM21FP-204ENST00000608637 956 ntBASIC20.47■□□□□ 0.87
SRP54P61011 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SRP54P61011 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SRP54P61011 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SRP54P61011 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.46■□□□□ 0.87
SRP54P61011 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.46■□□□□ 0.87
SRP54P61011 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.46■□□□□ 0.87
SRP54P61011 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.46■□□□□ 0.87
SRP54P61011 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.46■□□□□ 0.87
SRP54P61011 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.46■□□□□ 0.87
SRP54P61011 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.46■□□□□ 0.87
SRP54P61011 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SRP54P61011 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
SRP54P61011 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SRP54P61011 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.45■□□□□ 0.86
SRP54P61011 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.45■□□□□ 0.86
SRP54P61011 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.45■□□□□ 0.86
SRP54P61011 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
SRP54P61011 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms