Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SMUG1P1-201ENST00000590640 811 ntBASIC16.85■□□□□ 0.29
CDX1P47902 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX1P47902 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX1P47902 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX1P47902 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.84■□□□□ 0.29
CDX1P47902 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CDX1P47902 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CDX1P47902 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.84■□□□□ 0.29
CDX1P47902 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 CCDC92B-201ENST00000575506 885 ntBASIC16.84■□□□□ 0.29
CDX1P47902 TERF1P2-201ENST00000583350 1212 ntBASIC16.84■□□□□ 0.29
CDX1P47902 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CDX1P47902 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC16.84■□□□□ 0.29
CDX1P47902 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CDX1P47902 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC16.84■□□□□ 0.29
CDX1P47902 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.84■□□□□ 0.29
CDX1P47902 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX1P47902 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.83■□□□□ 0.29
CDX1P47902 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CDX1P47902 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CDX1P47902 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX1P47902 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX1P47902 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX1P47902 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC16.83■□□□□ 0.28
CDX1P47902 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
CDX1P47902 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.83■□□□□ 0.28
CDX1P47902 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX1P47902 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC16.83■□□□□ 0.28
CDX1P47902 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX1P47902 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX1P47902 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX1P47902 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.82■□□□□ 0.28
CDX1P47902 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.82■□□□□ 0.28
CDX1P47902 KRT18P14-201ENST00000534205 1250 ntBASIC16.82■□□□□ 0.28
CDX1P47902 DUX4L2-201ENST00000561772 1275 ntBASIC16.82■□□□□ 0.28
CDX1P47902 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX1P47902 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 AC092666.2-201ENST00000613287 246 ntBASIC16.82■□□□□ 0.28
CDX1P47902 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC16.82■□□□□ 0.28
CDX1P47902 DUX4L6-201ENST00000626483 1275 ntBASIC16.82■□□□□ 0.28
CDX1P47902 DUX4L1-201ENST00000627662 1275 ntBASIC16.82■□□□□ 0.28
CDX1P47902 DUX4L8-201ENST00000629013 1275 ntBASIC16.82■□□□□ 0.28
CDX1P47902 DUX4L3-201ENST00000630187 1275 ntBASIC16.82■□□□□ 0.28
CDX1P47902 DUX4L7-201ENST00000630678 1275 ntBASIC16.82■□□□□ 0.28
CDX1P47902 DUX4L5-201ENST00000630834 1275 ntBASIC16.82■□□□□ 0.28
CDX1P47902 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CDX1P47902 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX1P47902 LINC01006-201ENST00000333319 2292 ntBASIC16.81■□□□□ 0.28
CDX1P47902 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDX1P47902 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CDX1P47902 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CDX1P47902 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.81■□□□□ 0.28
CDX1P47902 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.81■□□□□ 0.28
CDX1P47902 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CDX1P47902 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDX1P47902 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDX1P47902 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.8■□□□□ 0.28
CDX1P47902 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDX1P47902 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms