Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCNFP41002 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCNFP41002 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCNFP41002 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCNFP41002 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.89■□□□□ 0.93
CCNFP41002 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 AC027612.3-201ENST00000413684 1047 ntBASIC20.89■□□□□ 0.93
CCNFP41002 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.89■□□□□ 0.93
CCNFP41002 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.89■□□□□ 0.93
CCNFP41002 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CCNFP41002 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.89■□□□□ 0.93
CCNFP41002 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
CCNFP41002 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCNFP41002 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.88■□□□□ 0.93
CCNFP41002 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.88■□□□□ 0.93
CCNFP41002 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.88■□□□□ 0.93
CCNFP41002 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CCNFP41002 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCNFP41002 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
CCNFP41002 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.87■□□□□ 0.93
CCNFP41002 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.87■□□□□ 0.93
CCNFP41002 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCNFP41002 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.87■□□□□ 0.93
CCNFP41002 MIR6084-201ENST00000622012 110 ntBASIC20.87■□□□□ 0.93
CCNFP41002 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CCNFP41002 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCNFP41002 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCNFP41002 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCNFP41002 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCNFP41002 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.86■□□□□ 0.93
CCNFP41002 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCNFP41002 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCNFP41002 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCNFP41002 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCNFP41002 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCNFP41002 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCNFP41002 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCNFP41002 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.85■□□□□ 0.93
CCNFP41002 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCNFP41002 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCNFP41002 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCNFP41002 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCNFP41002 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CCNFP41002 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCNFP41002 TPRG1LP1-201ENST00000598702 760 ntBASIC20.85■□□□□ 0.93
CCNFP41002 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.85■□□□□ 0.93
CCNFP41002 AC005224.4-201ENST00000583262 1652 ntBASIC20.85■□□□□ 0.93
CCNFP41002 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.85■□□□□ 0.93
CCNFP41002 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCNFP41002 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
CCNFP41002 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CCNFP41002 AC123595.1-201ENST00000440769 1046 ntBASIC20.84■□□□□ 0.93
CCNFP41002 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.84■□□□□ 0.93
CCNFP41002 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.84■□□□□ 0.93
CCNFP41002 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNFP41002 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CCNFP41002 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCNFP41002 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCNFP41002 AC027702.1-201ENST00000563810 1770 ntBASIC20.83■□□□□ 0.93
CCNFP41002 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCNFP41002 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCNFP41002 YBX1P1-201ENST00000445822 960 ntBASIC20.83■□□□□ 0.93
CCNFP41002 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.83■□□□□ 0.93
CCNFP41002 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms