Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 BEX3-202ENST00000372634 753 ntTSL 2 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 DUX4L4-201ENST00000566884 1269 ntBASIC15.62■□□□□ 0.09
HLA-DQA1P01909 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 AC074183.2-201ENST00000623112 922 ntBASIC15.62■□□□□ 0.09
HLA-DQA1P01909 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HLA-DQA1P01909 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 TNXA-203ENST00000507684 2038 ntBASIC15.61■□□□□ 0.09
HLA-DQA1P01909 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 KRT8P33-201ENST00000508125 1423 ntBASIC15.61■□□□□ 0.09
HLA-DQA1P01909 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 MTX2-204ENST00000443241 799 ntTSL 3 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 AC116562.4-201ENST00000641316 2276 ntBASIC15.61■□□□□ 0.09
HLA-DQA1P01909 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HLA-DQA1P01909 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 ERF-202ENST00000440177 2032 ntTSL 2 BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HLA-DQA1P01909 AC112907.3-201ENST00000577781 2400 ntBASIC15.59■□□□□ 0.09
HLA-DQA1P01909 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC15.59■□□□□ 0.09
HLA-DQA1P01909 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.58■□□□□ 0.09
HLA-DQA1P01909 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.58■□□□□ 0.09
HLA-DQA1P01909 PLK5-205ENST00000642079 1969 ntBASIC15.58■□□□□ 0.09
HLA-DQA1P01909 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
HLA-DQA1P01909 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HLA-DQA1P01909 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC15.58■□□□□ 0.09
HLA-DQA1P01909 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 LSM7-203ENST00000585409 512 ntTSL 2 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms