Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC093503.3-201ENST00000624917 2352 ntBASIC20.88■□□□□ 0.93
SHOX2O60902 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SHOX2O60902 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.88■□□□□ 0.93
SHOX2O60902 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.88■□□□□ 0.93
SHOX2O60902 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SHOX2O60902 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.88■□□□□ 0.93
SHOX2O60902 BHLHE23-202ENST00000612929 1109 ntBASIC20.88■□□□□ 0.93
SHOX2O60902 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SHOX2O60902 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SHOX2O60902 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHOX2O60902 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SHOX2O60902 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.87■□□□□ 0.93
SHOX2O60902 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SHOX2O60902 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
SHOX2O60902 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.87■□□□□ 0.93
SHOX2O60902 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SHOX2O60902 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.87■□□□□ 0.93
SHOX2O60902 ABHD17AP5-201ENST00000580133 923 ntBASIC20.87■□□□□ 0.93
SHOX2O60902 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHOX2O60902 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.87■□□□□ 0.93
SHOX2O60902 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.86■□□□□ 0.93
SHOX2O60902 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SHOX2O60902 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.86■□□□□ 0.93
SHOX2O60902 NTF6A-201ENST00000591175 560 ntBASIC20.86■□□□□ 0.93
SHOX2O60902 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SHOX2O60902 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SHOX2O60902 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHOX2O60902 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SHOX2O60902 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.85■□□□□ 0.93
SHOX2O60902 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SHOX2O60902 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SHOX2O60902 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SHOX2O60902 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.85■□□□□ 0.93
SHOX2O60902 PVT1_1.1-201ENST00000615125 194 ntBASIC20.85■□□□□ 0.93
SHOX2O60902 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SHOX2O60902 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SHOX2O60902 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SHOX2O60902 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.85■□□□□ 0.93
SHOX2O60902 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHOX2O60902 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 FP700111.2-201ENST00000619190 1892 ntBASIC20.84■□□□□ 0.93
SHOX2O60902 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.84■□□□□ 0.93
SHOX2O60902 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SHOX2O60902 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SHOX2O60902 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOX2O60902 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOX2O60902 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.83■□□□□ 0.93
SHOX2O60902 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.83■□□□□ 0.93
SHOX2O60902 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOX2O60902 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOX2O60902 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
SHOX2O60902 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOX2O60902 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.83■□□□□ 0.93
SHOX2O60902 KRT18P24-201ENST00000344739 1156 ntBASIC20.83■□□□□ 0.93
SHOX2O60902 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms