Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
CHD1O14646 AC007322.3-201ENST00000426526 701 ntBASIC34.26■■■■□ 3.07
CHD1O14646 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC34.26■■■■□ 3.07
CHD1O14646 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
CHD1O14646 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC34.26■■■■□ 3.07
CHD1O14646 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
CHD1O14646 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC34.26■■■■□ 3.07
CHD1O14646 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CHD1O14646 DUT-205ENST00000558813 769 ntTSL 2 BASIC34.25■■■■□ 3.07
CHD1O14646 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC34.25■■■■□ 3.07
CHD1O14646 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC34.25■■■■□ 3.07
CHD1O14646 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
CHD1O14646 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC34.24■■■■□ 3.07
CHD1O14646 MMP23A-201ENST00000234610 1017 ntBASIC34.24■■■■□ 3.07
CHD1O14646 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
CHD1O14646 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC34.24■■■■□ 3.07
CHD1O14646 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
CHD1O14646 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
CHD1O14646 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC34.24■■■■□ 3.07
CHD1O14646 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC34.24■■■■□ 3.07
CHD1O14646 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC34.24■■■■□ 3.07
CHD1O14646 AC245052.3-201ENST00000450182 901 ntBASIC34.24■■■■□ 3.07
CHD1O14646 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC34.24■■■■□ 3.07
CHD1O14646 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
CHD1O14646 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
CHD1O14646 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CHD1O14646 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC34.23■■■■□ 3.07
CHD1O14646 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC34.23■■■■□ 3.07
CHD1O14646 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC34.23■■■■□ 3.07
CHD1O14646 CYP21A1P-202ENST00000354927 1481 ntBASIC34.23■■■■□ 3.07
CHD1O14646 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CHD1O14646 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC34.22■■■■□ 3.07
CHD1O14646 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC34.22■■■■□ 3.07
CHD1O14646 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC34.22■■■■□ 3.07
CHD1O14646 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CHD1O14646 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
CHD1O14646 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC34.21■■■■□ 3.07
CHD1O14646 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC34.21■■■■□ 3.07
CHD1O14646 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC34.21■■■■□ 3.07
CHD1O14646 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC34.21■■■■□ 3.07
CHD1O14646 ABCB10P4-201ENST00000566803 2184 ntBASIC34.21■■■■□ 3.07
CHD1O14646 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC34.21■■■■□ 3.07
CHD1O14646 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC34.21■■■■□ 3.07
CHD1O14646 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC34.21■■■■□ 3.07
CHD1O14646 TERF1P1-201ENST00000311003 1181 ntBASIC34.21■■■■□ 3.07
CHD1O14646 SAPCD2P1-201ENST00000395413 1184 ntBASIC34.21■■■■□ 3.07
CHD1O14646 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC34.21■■■■□ 3.07
CHD1O14646 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC34.21■■■■□ 3.07
CHD1O14646 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC34.2■■■■□ 3.07
CHD1O14646 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
CHD1O14646 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC34.2■■■■□ 3.07
CHD1O14646 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC34.2■■■■□ 3.07
CHD1O14646 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
CHD1O14646 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
CHD1O14646 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC34.2■■■■□ 3.07
CHD1O14646 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC34.2■■■■□ 3.07
CHD1O14646 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC34.2■■■■□ 3.07
CHD1O14646 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC34.2■■■■□ 3.07
CHD1O14646 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC34.2■■■■□ 3.07
CHD1O14646 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC34.2■■■■□ 3.07
CHD1O14646 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC34.2■■■■□ 3.06
CHD1O14646 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.06
CHD1O14646 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
CHD1O14646 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
CHD1O14646 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC34.19■■■■□ 3.06
CHD1O14646 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC34.19■■■■□ 3.06
CHD1O14646 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC34.19■■■■□ 3.06
CHD1O14646 THEM4-205ENST00000489410 643 ntTSL 2 BASIC34.18■■■■□ 3.06
CHD1O14646 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC34.18■■■■□ 3.06
CHD1O14646 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC34.18■■■■□ 3.06
CHD1O14646 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC34.18■■■■□ 3.06
CHD1O14646 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
CHD1O14646 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
CHD1O14646 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
CHD1O14646 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC34.18■■■■□ 3.06
CHD1O14646 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC34.18■■■■□ 3.06
CHD1O14646 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC34.18■■■■□ 3.06
CHD1O14646 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
CHD1O14646 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC34.17■■■■□ 3.06
CHD1O14646 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC34.17■■■■□ 3.06
CHD1O14646 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
CHD1O14646 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC34.17■■■■□ 3.06
CHD1O14646 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC34.17■■■■□ 3.06
CHD1O14646 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC34.16■■■■□ 3.06
CHD1O14646 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC34.16■■■■□ 3.06
CHD1O14646 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC34.16■■■■□ 3.06
CHD1O14646 NTF6B-201ENST00000591913 560 ntBASIC34.16■■■■□ 3.06
CHD1O14646 AL121894.2-201ENST00000602977 491 ntBASIC34.16■■■■□ 3.06
CHD1O14646 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
CHD1O14646 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
CHD1O14646 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC34.16■■■■□ 3.06
CHD1O14646 NUDT16P1-203ENST00000513809 620 ntBASIC34.16■■■■□ 3.06
CHD1O14646 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
CHD1O14646 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
CHD1O14646 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC34.15■■■■□ 3.06
CHD1O14646 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
CHD1O14646 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
CHD1O14646 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
CHD1O14646 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
CHD1O14646 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms