Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SLC25A24-204ENST00000569674 2357 ntBASIC20.01■□□□□ 0.79
SLC28A1O00337 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SLC28A1O00337 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SLC28A1O00337 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SLC28A1O00337 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SLC28A1O00337 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.01■□□□□ 0.79
SLC28A1O00337 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.01■□□□□ 0.79
SLC28A1O00337 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SLC28A1O00337 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SLC28A1O00337 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SLC28A1O00337 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SLC28A1O00337 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SLC28A1O00337 NT5C3AP1-201ENST00000394500 1012 ntBASIC20■□□□□ 0.79
SLC28A1O00337 TPRG1LP1-201ENST00000598702 760 ntBASIC20■□□□□ 0.79
SLC28A1O00337 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20■□□□□ 0.79
SLC28A1O00337 AL358852.1-201ENST00000623174 1268 ntBASIC20■□□□□ 0.79
SLC28A1O00337 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SLC28A1O00337 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SLC28A1O00337 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.99■□□□□ 0.79
SLC28A1O00337 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
SLC28A1O00337 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
SLC28A1O00337 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 AP005212.1-201ENST00000581547 1997 ntBASIC19.99■□□□□ 0.79
SLC28A1O00337 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
SLC28A1O00337 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SLC28A1O00337 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SLC28A1O00337 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 AC007225.1-201ENST00000566331 1836 ntBASIC19.98■□□□□ 0.79
SLC28A1O00337 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.98■□□□□ 0.79
SLC28A1O00337 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.98■□□□□ 0.79
SLC28A1O00337 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.98■□□□□ 0.79
SLC28A1O00337 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.98■□□□□ 0.79
SLC28A1O00337 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.98■□□□□ 0.79
SLC28A1O00337 AL139246.5-201ENST00000606645 996 ntBASIC19.98■□□□□ 0.79
SLC28A1O00337 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.98■□□□□ 0.79
SLC28A1O00337 AC061975.6-201ENST00000579045 1553 ntBASIC19.98■□□□□ 0.79
SLC28A1O00337 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.98■□□□□ 0.79
SLC28A1O00337 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SLC28A1O00337 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SLC28A1O00337 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.97■□□□□ 0.79
SLC28A1O00337 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SLC28A1O00337 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.97■□□□□ 0.79
SLC28A1O00337 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SLC28A1O00337 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.97■□□□□ 0.79
SLC28A1O00337 AC008175.2-201ENST00000612840 297 ntBASIC19.97■□□□□ 0.79
SLC28A1O00337 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.97■□□□□ 0.79
SLC28A1O00337 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.97■□□□□ 0.79
SLC28A1O00337 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
SLC28A1O00337 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SLC28A1O00337 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.97■□□□□ 0.79
SLC28A1O00337 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SLC28A1O00337 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
SLC28A1O00337 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SLC28A1O00337 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.96■□□□□ 0.79
SLC28A1O00337 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.96■□□□□ 0.79
SLC28A1O00337 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.96■□□□□ 0.79
SLC28A1O00337 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SLC28A1O00337 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 POU5F1P4-201ENST00000413175 1085 ntBASIC19.96■□□□□ 0.79
SLC28A1O00337 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SLC28A1O00337 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.96■□□□□ 0.79
SLC28A1O00337 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SLC28A1O00337 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SLC28A1O00337 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms