Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 AC007225.1-201ENST00000566331 1836 ntBASIC22.42■■□□□ 1.18
LRRC53A6NM62 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
LRRC53A6NM62 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
LRRC53A6NM62 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRRC53A6NM62 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC22.41■■□□□ 1.18
LRRC53A6NM62 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC22.4■■□□□ 1.18
LRRC53A6NM62 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.4■■□□□ 1.18
LRRC53A6NM62 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.4■■□□□ 1.18
LRRC53A6NM62 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
LRRC53A6NM62 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
LRRC53A6NM62 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LRRC53A6NM62 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.39■■□□□ 1.18
LRRC53A6NM62 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
LRRC53A6NM62 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
LRRC53A6NM62 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
LRRC53A6NM62 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC22.39■■□□□ 1.18
LRRC53A6NM62 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC53A6NM62 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC53A6NM62 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.39■■□□□ 1.17
LRRC53A6NM62 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.39■■□□□ 1.17
LRRC53A6NM62 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC53A6NM62 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC53A6NM62 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.39■■□□□ 1.17
LRRC53A6NM62 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC53A6NM62 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC53A6NM62 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRRC53A6NM62 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC53A6NM62 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.38■■□□□ 1.17
LRRC53A6NM62 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC53A6NM62 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC53A6NM62 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC53A6NM62 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC53A6NM62 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.38■■□□□ 1.17
LRRC53A6NM62 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC53A6NM62 NT5C3AP1-201ENST00000394500 1012 ntBASIC22.38■■□□□ 1.17
LRRC53A6NM62 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.38■■□□□ 1.17
LRRC53A6NM62 AL354811.1-201ENST00000610286 706 ntBASIC22.38■■□□□ 1.17
LRRC53A6NM62 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRRC53A6NM62 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.38■■□□□ 1.17
LRRC53A6NM62 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
LRRC53A6NM62 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
LRRC53A6NM62 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRRC53A6NM62 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
LRRC53A6NM62 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
LRRC53A6NM62 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRRC53A6NM62 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRRC53A6NM62 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 CPT2-209ENST00000636935 803 ntTSL 5 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRRC53A6NM62 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.37■■□□□ 1.17
LRRC53A6NM62 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC53A6NM62 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC53A6NM62 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC53A6NM62 AP004607.4-201ENST00000530158 1459 ntBASIC22.36■■□□□ 1.17
LRRC53A6NM62 AL391422.3-201ENST00000603791 2761 ntBASIC22.36■■□□□ 1.17
LRRC53A6NM62 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC53A6NM62 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC53A6NM62 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC53A6NM62 MIR6084-201ENST00000622012 110 ntBASIC22.36■■□□□ 1.17
LRRC53A6NM62 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.36■■□□□ 1.17
LRRC53A6NM62 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
LRRC53A6NM62 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
LRRC53A6NM62 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
LRRC53A6NM62 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC22.36■■□□□ 1.17
LRRC53A6NM62 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRRC53A6NM62 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
LRRC53A6NM62 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.35■■□□□ 1.17
LRRC53A6NM62 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
LRRC53A6NM62 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms