Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
TRAV1-2A0A0B4J238 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV1-2A0A0B4J238 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV1-2A0A0B4J238 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV1-2A0A0B4J238 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
TRAV1-2A0A0B4J238 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV1-2A0A0B4J238 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
TRAV1-2A0A0B4J238 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV1-2A0A0B4J238 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 UNC93B8-201ENST00000511903 705 ntBASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV1-2A0A0B4J238 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms