Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USH1CQ9Y6N9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 AC006455.2-201ENST00000429931 906 ntBASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 AC087289.5-201ENST00000586076 3175 ntBASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
USH1CQ9Y6N9 AC027702.1-201ENST00000563810 1770 ntBASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USH1CQ9Y6N9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 AC003102.1-202ENST00000563394 1796 ntBASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USH1CQ9Y6N9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 TSPY9P-201ENST00000440215 945 ntBASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 TSPY11P-201ENST00000442607 1045 ntBASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 AC087239.1-201ENST00000622671 572 ntBASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 AL020996.1-203ENST00000536896 2307 ntBASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USH1CQ9Y6N9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms