Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
LRFN1Q9P244 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRFN1Q9P244 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRFN1Q9P244 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRFN1Q9P244 RARRES2P4-201ENST00000514074 484 ntBASIC19.14■□□□□ 0.65
LRFN1Q9P244 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
LRFN1Q9P244 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRFN1Q9P244 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRFN1Q9P244 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.14■□□□□ 0.65
LRFN1Q9P244 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRFN1Q9P244 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.14■□□□□ 0.65
LRFN1Q9P244 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
LRFN1Q9P244 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LRFN1Q9P244 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRFN1Q9P244 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 BX276092.2-201ENST00000417668 665 ntBASIC19.12■□□□□ 0.65
LRFN1Q9P244 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.12■□□□□ 0.65
LRFN1Q9P244 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.12■□□□□ 0.65
LRFN1Q9P244 AC098934.4-201ENST00000564127 592 ntBASIC19.12■□□□□ 0.65
LRFN1Q9P244 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.12■□□□□ 0.65
LRFN1Q9P244 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.12■□□□□ 0.65
LRFN1Q9P244 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRFN1Q9P244 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 AC091799.1-201ENST00000422823 811 ntBASIC19.11■□□□□ 0.65
LRFN1Q9P244 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.11■□□□□ 0.65
LRFN1Q9P244 CDV3P1-201ENST00000471403 739 ntBASIC19.11■□□□□ 0.65
LRFN1Q9P244 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRFN1Q9P244 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.11■□□□□ 0.65
LRFN1Q9P244 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 AC010980.2-201ENST00000587099 1412 ntBASIC19.1■□□□□ 0.65
LRFN1Q9P244 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.1■□□□□ 0.65
LRFN1Q9P244 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LRFN1Q9P244 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms