Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
SMARCAL1Q9NZC9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 AP005435.1-201ENST00000529293 1178 ntBASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 DUX4L19-201ENST00000557448 1267 ntBASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.9■■□□□ 1.1
SMARCAL1Q9NZC9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
SMARCAL1Q9NZC9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 SMUG1P1-201ENST00000590640 811 ntBASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 AC136469.2-201ENST00000623944 1028 ntBASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 AC007225.1-201ENST00000566331 1836 ntBASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
SMARCAL1Q9NZC9 AC020907.5-201ENST00000624372 1936 ntBASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 AL512408.1-201ENST00000569378 2000 ntBASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SMARCAL1Q9NZC9 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMARCAL1Q9NZC9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms