Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 RAP2CP1-201ENST00000605103 478 ntBASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 AC231657.2-201ENST00000624556 255 ntBASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM39Q9HCM9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 AC243732.1-201ENST00000612648 864 ntBASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM39Q9HCM9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 RBM17P2-201ENST00000616397 1405 ntBASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 AC013268.1-206ENST00000638368 961 ntBASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 AC112229.1-201ENST00000639295 961 ntBASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM39Q9HCM9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM39Q9HCM9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM39Q9HCM9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM39Q9HCM9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM39Q9HCM9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 AC007322.1-201ENST00000426983 750 ntBASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
TRIM39Q9HCM9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 CNN2P6-201ENST00000439038 900 ntBASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM39Q9HCM9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms