Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VMP1Q96GC9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.88■□□□□ 0.77
VMP1Q96GC9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VMP1Q96GC9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.87■□□□□ 0.77
VMP1Q96GC9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VMP1Q96GC9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VMP1Q96GC9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.87■□□□□ 0.77
VMP1Q96GC9 AP004607.4-201ENST00000530158 1459 ntBASIC19.87■□□□□ 0.77
VMP1Q96GC9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VMP1Q96GC9 AC004854.2-201ENST00000608450 1441 ntBASIC19.87■□□□□ 0.77
VMP1Q96GC9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VMP1Q96GC9 FAM99A-202ENST00000538190 1989 ntBASIC19.87■□□□□ 0.77
VMP1Q96GC9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.87■□□□□ 0.77
VMP1Q96GC9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.87■□□□□ 0.77
VMP1Q96GC9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VMP1Q96GC9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VMP1Q96GC9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.87■□□□□ 0.77
VMP1Q96GC9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.86■□□□□ 0.77
VMP1Q96GC9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.86■□□□□ 0.77
VMP1Q96GC9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VMP1Q96GC9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.86■□□□□ 0.77
VMP1Q96GC9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.86■□□□□ 0.77
VMP1Q96GC9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
VMP1Q96GC9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 LINC01521-201ENST00000504184 1943 ntBASIC19.86■□□□□ 0.77
VMP1Q96GC9 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.86■□□□□ 0.77
VMP1Q96GC9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VMP1Q96GC9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 KRT19P1-201ENST00000405746 1186 ntBASIC19.85■□□□□ 0.77
VMP1Q96GC9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 AC022517.1-201ENST00000592429 346 ntBASIC19.85■□□□□ 0.77
VMP1Q96GC9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.85■□□□□ 0.77
VMP1Q96GC9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VMP1Q96GC9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 KRT18P61-201ENST00000585825 1298 ntBASIC19.84■□□□□ 0.77
VMP1Q96GC9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
VMP1Q96GC9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VMP1Q96GC9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.83■□□□□ 0.77
VMP1Q96GC9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VMP1Q96GC9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VMP1Q96GC9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
VMP1Q96GC9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VMP1Q96GC9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.83■□□□□ 0.77
VMP1Q96GC9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.83■□□□□ 0.77
VMP1Q96GC9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.83■□□□□ 0.77
VMP1Q96GC9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
VMP1Q96GC9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VMP1Q96GC9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VMP1Q96GC9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.83■□□□□ 0.76
VMP1Q96GC9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
VMP1Q96GC9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VMP1Q96GC9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VMP1Q96GC9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.83■□□□□ 0.76
VMP1Q96GC9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms