Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 AC016769.1-201ENST00000409132 1010 ntBASIC20.41■□□□□ 0.86
VRK3Q8IV63 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VRK3Q8IV63 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VRK3Q8IV63 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VRK3Q8IV63 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VRK3Q8IV63 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VRK3Q8IV63 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 SLC7A5P1-201ENST00000568957 537 ntBASIC20.4■□□□□ 0.86
VRK3Q8IV63 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VRK3Q8IV63 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.39■□□□□ 0.86
VRK3Q8IV63 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VRK3Q8IV63 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VRK3Q8IV63 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VRK3Q8IV63 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VRK3Q8IV63 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.39■□□□□ 0.85
VRK3Q8IV63 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VRK3Q8IV63 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VRK3Q8IV63 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VRK3Q8IV63 MFSD11-216ENST00000590393 1141 ntBASIC20.39■□□□□ 0.85
VRK3Q8IV63 AC011767.1-201ENST00000617410 1153 ntBASIC20.39■□□□□ 0.85
VRK3Q8IV63 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VRK3Q8IV63 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VRK3Q8IV63 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VRK3Q8IV63 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.38■□□□□ 0.85
VRK3Q8IV63 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VRK3Q8IV63 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VRK3Q8IV63 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VRK3Q8IV63 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.38■□□□□ 0.85
VRK3Q8IV63 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VRK3Q8IV63 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
VRK3Q8IV63 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VRK3Q8IV63 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VRK3Q8IV63 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VRK3Q8IV63 RBM17P2-201ENST00000616397 1405 ntBASIC20.37■□□□□ 0.85
VRK3Q8IV63 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VRK3Q8IV63 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.37■□□□□ 0.85
VRK3Q8IV63 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VRK3Q8IV63 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VRK3Q8IV63 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.37■□□□□ 0.85
VRK3Q8IV63 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VRK3Q8IV63 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VRK3Q8IV63 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.37■□□□□ 0.85
VRK3Q8IV63 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VRK3Q8IV63 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
VRK3Q8IV63 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VRK3Q8IV63 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VRK3Q8IV63 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
VRK3Q8IV63 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.36■□□□□ 0.85
VRK3Q8IV63 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
VRK3Q8IV63 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.36■□□□□ 0.85
VRK3Q8IV63 KRT18P11-201ENST00000435214 1283 ntBASIC20.36■□□□□ 0.85
VRK3Q8IV63 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.36■□□□□ 0.85
VRK3Q8IV63 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
VRK3Q8IV63 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VRK3Q8IV63 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.35■□□□□ 0.85
VRK3Q8IV63 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms