Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FBXW4P1-201ENST00000426721 2239 ntBASIC25.55■■□□□ 1.68
USP48Q86UV5 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC25.54■■□□□ 1.68
USP48Q86UV5 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP48Q86UV5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP48Q86UV5 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP48Q86UV5 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC25.54■■□□□ 1.68
USP48Q86UV5 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC25.54■■□□□ 1.68
USP48Q86UV5 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC25.54■■□□□ 1.68
USP48Q86UV5 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP48Q86UV5 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP48Q86UV5 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP48Q86UV5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USP48Q86UV5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.53■■□□□ 1.68
USP48Q86UV5 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC25.53■■□□□ 1.68
USP48Q86UV5 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC25.53■■□□□ 1.68
USP48Q86UV5 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC25.53■■□□□ 1.68
USP48Q86UV5 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
USP48Q86UV5 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC25.53■■□□□ 1.68
USP48Q86UV5 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
USP48Q86UV5 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
USP48Q86UV5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.52■■□□□ 1.68
USP48Q86UV5 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
USP48Q86UV5 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
USP48Q86UV5 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC25.52■■□□□ 1.68
USP48Q86UV5 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
USP48Q86UV5 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
USP48Q86UV5 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC25.52■■□□□ 1.68
USP48Q86UV5 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC25.52■■□□□ 1.68
USP48Q86UV5 MMD2-204ENST00000612910 778 ntTSL 5 BASIC25.52■■□□□ 1.68
USP48Q86UV5 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
USP48Q86UV5 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
USP48Q86UV5 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.52■■□□□ 1.68
USP48Q86UV5 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC25.52■■□□□ 1.68
USP48Q86UV5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
USP48Q86UV5 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.68
USP48Q86UV5 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP48Q86UV5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP48Q86UV5 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP48Q86UV5 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP48Q86UV5 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP48Q86UV5 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP48Q86UV5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC25.51■■□□□ 1.67
USP48Q86UV5 UNC93B4-201ENST00000505679 747 ntBASIC25.51■■□□□ 1.67
USP48Q86UV5 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC25.51■■□□□ 1.67
USP48Q86UV5 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC25.51■■□□□ 1.67
USP48Q86UV5 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC25.51■■□□□ 1.67
USP48Q86UV5 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
USP48Q86UV5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.51■■□□□ 1.67
USP48Q86UV5 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
USP48Q86UV5 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
USP48Q86UV5 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC25.5■■□□□ 1.67
USP48Q86UV5 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC25.5■■□□□ 1.67
USP48Q86UV5 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
USP48Q86UV5 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC25.5■■□□□ 1.67
USP48Q86UV5 AC091874.3-201ENST00000512672 1195 ntBASIC25.5■■□□□ 1.67
USP48Q86UV5 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC25.5■■□□□ 1.67
USP48Q86UV5 AP004607.7-201ENST00000527152 1677 ntBASIC25.5■■□□□ 1.67
USP48Q86UV5 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC25.5■■□□□ 1.67
USP48Q86UV5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC25.5■■□□□ 1.67
USP48Q86UV5 AL024507.2-201ENST00000606070 2574 ntBASIC25.5■■□□□ 1.67
USP48Q86UV5 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC25.49■■□□□ 1.67
USP48Q86UV5 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
USP48Q86UV5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC25.49■■□□□ 1.67
USP48Q86UV5 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC25.49■■□□□ 1.67
USP48Q86UV5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC25.49■■□□□ 1.67
USP48Q86UV5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC25.49■■□□□ 1.67
USP48Q86UV5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USP48Q86UV5 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
USP48Q86UV5 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
USP48Q86UV5 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
USP48Q86UV5 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP48Q86UV5 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC25.48■■□□□ 1.67
USP48Q86UV5 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC25.48■■□□□ 1.67
USP48Q86UV5 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC25.48■■□□□ 1.67
USP48Q86UV5 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
USP48Q86UV5 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC25.48■■□□□ 1.67
USP48Q86UV5 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC25.48■■□□□ 1.67
USP48Q86UV5 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP48Q86UV5 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC25.48■■□□□ 1.67
USP48Q86UV5 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
USP48Q86UV5 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USP48Q86UV5 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms