Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
LINC00643Q86TS7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
LINC00643Q86TS7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
LINC00643Q86TS7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC13.08□□□□□ -0.31
LINC00643Q86TS7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
LINC00643Q86TS7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 AC093503.3-201ENST00000624917 2352 ntBASIC13.08□□□□□ -0.32
LINC00643Q86TS7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
LINC00643Q86TS7 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 OR6D1P-202ENST00000641007 5290 ntBASIC13.07□□□□□ -0.32
LINC00643Q86TS7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
LINC00643Q86TS7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 HR-201ENST00000312841 5351 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 PCDHB18P-201ENST00000524813 2368 ntBASIC13.06□□□□□ -0.32
LINC00643Q86TS7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
LINC00643Q86TS7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms