Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 FITM1-202ENST00000559294 800 ntBASIC11.6□□□□□ -0.55
UBR4Q5T4S7 AC027796.2-201ENST00000575326 344 ntBASIC11.6□□□□□ -0.55
UBR4Q5T4S7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 AF186192.3-201ENST00000583427 947 ntBASIC11.59□□□□□ -0.55
UBR4Q5T4S7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 AC010203.1-204ENST00000548782 407 ntBASIC11.59□□□□□ -0.55
UBR4Q5T4S7 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 AK4P3-201ENST00000418260 669 ntBASIC11.59□□□□□ -0.55
UBR4Q5T4S7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
UBR4Q5T4S7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
UBR4Q5T4S7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.55
UBR4Q5T4S7 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC11.58□□□□□ -0.55
UBR4Q5T4S7 AL355355.2-201ENST00000442321 338 ntBASIC11.58□□□□□ -0.55
UBR4Q5T4S7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC11.58□□□□□ -0.55
UBR4Q5T4S7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
UBR4Q5T4S7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 KRASP1-201ENST00000407852 552 ntBASIC11.58□□□□□ -0.56
UBR4Q5T4S7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 AC239800.4-201ENST00000603712 296 ntBASIC11.58□□□□□ -0.56
UBR4Q5T4S7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 AL591742.1-201ENST00000604433 565 ntBASIC11.58□□□□□ -0.56
UBR4Q5T4S7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 AC010501.1-201ENST00000606270 1962 ntBASIC11.58□□□□□ -0.56
UBR4Q5T4S7 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC11.58□□□□□ -0.56
UBR4Q5T4S7 AC004951.3-201ENST00000418645 1148 ntBASIC11.57□□□□□ -0.56
UBR4Q5T4S7 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 ATP5G1P1-201ENST00000448724 379 ntBASIC11.57□□□□□ -0.56
UBR4Q5T4S7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 OR7E47P-201ENST00000546390 1422 ntBASIC11.57□□□□□ -0.56
UBR4Q5T4S7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 FAM197Y1-201ENST00000421178 764 ntBASIC11.57□□□□□ -0.56
UBR4Q5T4S7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
UBR4Q5T4S7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC11.56□□□□□ -0.56
UBR4Q5T4S7 UNC93B7-201ENST00000509439 705 ntBASIC11.56□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms