Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CDX1P47902 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.9■□□□□ 0.3
CDX1P47902 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.9■□□□□ 0.3
CDX1P47902 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CDX1P47902 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC16.9■□□□□ 0.3
CDX1P47902 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CDX1P47902 LINC02228-203ENST00000641970 1355 ntBASIC16.89■□□□□ 0.3
CDX1P47902 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
CDX1P47902 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
CDX1P47902 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CDX1P47902 NT5C3AP1-201ENST00000394500 1012 ntBASIC16.89■□□□□ 0.29
CDX1P47902 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC16.89■□□□□ 0.29
CDX1P47902 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC16.89■□□□□ 0.29
CDX1P47902 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CDX1P47902 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX1P47902 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.89■□□□□ 0.29
CDX1P47902 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CDX1P47902 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDX1P47902 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
CDX1P47902 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX1P47902 LETM1P2-201ENST00000597330 2178 ntBASIC16.88■□□□□ 0.29
CDX1P47902 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX1P47902 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CDX1P47902 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.88■□□□□ 0.29
CDX1P47902 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC16.88■□□□□ 0.29
CDX1P47902 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC16.88■□□□□ 0.29
CDX1P47902 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CDX1P47902 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDX1P47902 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
CDX1P47902 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.88■□□□□ 0.29
CDX1P47902 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX1P47902 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDX1P47902 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
CDX1P47902 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
CDX1P47902 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CDX1P47902 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.87■□□□□ 0.29
CDX1P47902 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC16.87■□□□□ 0.29
CDX1P47902 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.87■□□□□ 0.29
CDX1P47902 AC104564.3-201ENST00000582367 638 ntBASIC16.87■□□□□ 0.29
CDX1P47902 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CDX1P47902 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC16.87■□□□□ 0.29
CDX1P47902 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.87■□□□□ 0.29
CDX1P47902 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX1P47902 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CDX1P47902 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.86■□□□□ 0.29
CDX1P47902 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX1P47902 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.86■□□□□ 0.29
CDX1P47902 AC080038.3-201ENST00000623346 1952 ntBASIC16.86■□□□□ 0.29
CDX1P47902 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX1P47902 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX1P47902 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
CDX1P47902 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX1P47902 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CDX1P47902 AL162430.1-201ENST00000480705 870 ntBASIC16.86■□□□□ 0.29
CDX1P47902 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC16.86■□□□□ 0.29
CDX1P47902 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC16.86■□□□□ 0.29
CDX1P47902 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDX1P47902 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX1P47902 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
CDX1P47902 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX1P47902 BX005040.4-201ENST00000637145 1518 ntBASIC16.86■□□□□ 0.29
CDX1P47902 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CDX1P47902 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CDX1P47902 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CDX1P47902 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 LINC01960-201ENST00000563759 1884 ntBASIC16.85■□□□□ 0.29
CDX1P47902 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX1P47902 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX1P47902 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms