Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
MSX2P35548 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.87■□□□□ 0.77
MSX2P35548 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
MSX2P35548 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
MSX2P35548 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.86■□□□□ 0.77
MSX2P35548 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 AC007225.1-201ENST00000566331 1836 ntBASIC19.86■□□□□ 0.77
MSX2P35548 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 AC010525.1-201ENST00000585559 441 ntBASIC19.86■□□□□ 0.77
MSX2P35548 AC099791.2-201ENST00000605725 427 ntBASIC19.86■□□□□ 0.77
MSX2P35548 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
MSX2P35548 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
MSX2P35548 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.86■□□□□ 0.77
MSX2P35548 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MSX2P35548 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.85■□□□□ 0.77
MSX2P35548 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 AC121338.2-201ENST00000622535 1744 ntBASIC19.85■□□□□ 0.77
MSX2P35548 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
MSX2P35548 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
MSX2P35548 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
MSX2P35548 AC087239.1-201ENST00000622671 572 ntBASIC19.85■□□□□ 0.77
MSX2P35548 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MSX2P35548 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
MSX2P35548 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSX2P35548 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSX2P35548 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSX2P35548 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.84■□□□□ 0.77
MSX2P35548 AL020996.1-203ENST00000536896 2307 ntBASIC19.84■□□□□ 0.77
MSX2P35548 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSX2P35548 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.84■□□□□ 0.77
MSX2P35548 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSX2P35548 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.84■□□□□ 0.77
MSX2P35548 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSX2P35548 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSX2P35548 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSX2P35548 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MSX2P35548 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.83■□□□□ 0.77
MSX2P35548 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.83■□□□□ 0.77
MSX2P35548 MIR3181-201ENST00000578512 73 ntBASIC19.83■□□□□ 0.77
MSX2P35548 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSX2P35548 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
MSX2P35548 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSX2P35548 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSX2P35548 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 AC239859.2-201ENST00000444165 318 ntBASIC19.82■□□□□ 0.76
MSX2P35548 AL034346.1-201ENST00000568244 1277 ntBASIC19.82■□□□□ 0.76
MSX2P35548 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.82■□□□□ 0.76
MSX2P35548 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX2P35548 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
MSX2P35548 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.81■□□□□ 0.76
MSX2P35548 OR2I1P-207ENST00000453522 948 ntBASIC19.81■□□□□ 0.76
MSX2P35548 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX2P35548 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.81■□□□□ 0.76
MSX2P35548 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms