Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
PGK1P00558 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.33■■□□□ 1.33
PGK1P00558 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.33■■□□□ 1.33
PGK1P00558 RN7SL471P-201ENST00000580476 299 ntBASIC23.33■■□□□ 1.33
PGK1P00558 MIR4497-201ENST00000583208 89 ntBASIC23.33■■□□□ 1.33
PGK1P00558 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC23.33■■□□□ 1.33
PGK1P00558 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC23.33■■□□□ 1.33
PGK1P00558 Z99916.2-201ENST00000604037 246 ntBASIC23.33■■□□□ 1.33
PGK1P00558 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.32■■□□□ 1.32
PGK1P00558 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
PGK1P00558 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.32■■□□□ 1.32
PGK1P00558 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC23.32■■□□□ 1.32
PGK1P00558 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 SPIB-206ENST00000596074 847 ntTSL 2 BASIC23.32■■□□□ 1.32
PGK1P00558 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
PGK1P00558 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.32■■□□□ 1.32
PGK1P00558 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PGK1P00558 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PGK1P00558 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
PGK1P00558 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.31■■□□□ 1.32
PGK1P00558 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PGK1P00558 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.31■■□□□ 1.32
PGK1P00558 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PGK1P00558 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PGK1P00558 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.31■■□□□ 1.32
PGK1P00558 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PGK1P00558 SOX15-203ENST00000570788 1093 ntBASIC23.31■■□□□ 1.32
PGK1P00558 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PGK1P00558 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
PGK1P00558 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
PGK1P00558 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PGK1P00558 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
PGK1P00558 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PGK1P00558 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PGK1P00558 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.3■■□□□ 1.32
PGK1P00558 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC23.3■■□□□ 1.32
PGK1P00558 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.3■■□□□ 1.32
PGK1P00558 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PGK1P00558 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
PGK1P00558 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PGK1P00558 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.29■■□□□ 1.32
PGK1P00558 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PGK1P00558 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PGK1P00558 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PGK1P00558 ECEL1P3-201ENST00000427961 737 ntBASIC23.29■■□□□ 1.32
PGK1P00558 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.29■■□□□ 1.32
PGK1P00558 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.29■■□□□ 1.32
PGK1P00558 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.29■■□□□ 1.32
PGK1P00558 AC010542.4-201ENST00000563151 1910 ntBASIC23.29■■□□□ 1.32
PGK1P00558 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.28■■□□□ 1.32
PGK1P00558 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.28■■□□□ 1.32
PGK1P00558 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.28■■□□□ 1.32
PGK1P00558 SNORA78-201ENST00000459373 127 ntBASIC23.28■■□□□ 1.32
PGK1P00558 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC23.28■■□□□ 1.32
PGK1P00558 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC23.28■■□□□ 1.32
PGK1P00558 OR2A1-AS1-207ENST00000486094 819 ntBASIC23.28■■□□□ 1.32
PGK1P00558 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC23.28■■□□□ 1.32
PGK1P00558 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.28■■□□□ 1.32
PGK1P00558 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.28■■□□□ 1.32
PGK1P00558 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.28■■□□□ 1.32
PGK1P00558 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.28■■□□□ 1.32
PGK1P00558 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PGK1P00558 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
PGK1P00558 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PGK1P00558 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
PGK1P00558 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PGK1P00558 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
PGK1P00558 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
PGK1P00558 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.27■■□□□ 1.32
PGK1P00558 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC23.27■■□□□ 1.32
PGK1P00558 AC069544.1-201ENST00000609399 999 ntBASIC23.27■■□□□ 1.32
PGK1P00558 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.27■■□□□ 1.32
PGK1P00558 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
PGK1P00558 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PGK1P00558 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PGK1P00558 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PGK1P00558 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PGK1P00558 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PGK1P00558 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PGK1P00558 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms