Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
ABCA1O95477 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.43■□□□□ 0.38
ABCA1O95477 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.43■□□□□ 0.38
ABCA1O95477 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 AC120498.10-201ENST00000621827 505 ntBASIC17.43■□□□□ 0.38
ABCA1O95477 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.43■□□□□ 0.38
ABCA1O95477 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
ABCA1O95477 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
ABCA1O95477 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
ABCA1O95477 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.42■□□□□ 0.38
ABCA1O95477 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
ABCA1O95477 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.42■□□□□ 0.38
ABCA1O95477 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
ABCA1O95477 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 AC073648.6-201ENST00000641589 218 ntBASIC17.42■□□□□ 0.38
ABCA1O95477 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
ABCA1O95477 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
ABCA1O95477 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.41■□□□□ 0.38
ABCA1O95477 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.41■□□□□ 0.38
ABCA1O95477 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.41■□□□□ 0.38
ABCA1O95477 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.41■□□□□ 0.38
ABCA1O95477 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
ABCA1O95477 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
ABCA1O95477 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.41■□□□□ 0.38
ABCA1O95477 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.41■□□□□ 0.38
ABCA1O95477 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
ABCA1O95477 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
ABCA1O95477 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.41■□□□□ 0.38
ABCA1O95477 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ABCA1O95477 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.4■□□□□ 0.38
ABCA1O95477 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.4■□□□□ 0.38
ABCA1O95477 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.4■□□□□ 0.38
ABCA1O95477 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.4■□□□□ 0.38
ABCA1O95477 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.4■□□□□ 0.38
ABCA1O95477 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.4■□□□□ 0.38
ABCA1O95477 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.4■□□□□ 0.38
ABCA1O95477 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
ABCA1O95477 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.4■□□□□ 0.38
ABCA1O95477 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.4■□□□□ 0.38
ABCA1O95477 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA1O95477 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
ABCA1O95477 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
ABCA1O95477 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.39■□□□□ 0.37
ABCA1O95477 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA1O95477 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA1O95477 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.39■□□□□ 0.37
ABCA1O95477 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA1O95477 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
ABCA1O95477 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA1O95477 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.39■□□□□ 0.37
ABCA1O95477 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.39■□□□□ 0.37
ABCA1O95477 AC053503.5-201ENST00000601508 636 ntBASIC17.39■□□□□ 0.37
ABCA1O95477 PKD1P6-201ENST00000343738 4769 ntBASIC17.39■□□□□ 0.37
ABCA1O95477 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA1O95477 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
ABCA1O95477 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
ABCA1O95477 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA1O95477 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA1O95477 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA1O95477 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA1O95477 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA1O95477 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms