Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
PROM1O43490 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PROM1O43490 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.78■□□□□ 0.76
PROM1O43490 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.78■□□□□ 0.76
PROM1O43490 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
PROM1O43490 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PROM1O43490 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.78■□□□□ 0.76
PROM1O43490 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PROM1O43490 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PROM1O43490 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.78■□□□□ 0.76
PROM1O43490 AL049796.1-201ENST00000565336 1766 ntBASIC19.78■□□□□ 0.76
PROM1O43490 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
PROM1O43490 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PROM1O43490 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.77■□□□□ 0.76
PROM1O43490 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PROM1O43490 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.77■□□□□ 0.76
PROM1O43490 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PROM1O43490 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.77■□□□□ 0.76
PROM1O43490 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PROM1O43490 KRT18P20-201ENST00000548986 1279 ntBASIC19.77■□□□□ 0.76
PROM1O43490 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PROM1O43490 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PROM1O43490 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PROM1O43490 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
PROM1O43490 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.77■□□□□ 0.75
PROM1O43490 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
PROM1O43490 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
PROM1O43490 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
PROM1O43490 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.76■□□□□ 0.75
PROM1O43490 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
PROM1O43490 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.76■□□□□ 0.75
PROM1O43490 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.76■□□□□ 0.75
PROM1O43490 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PROM1O43490 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.76■□□□□ 0.75
PROM1O43490 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PROM1O43490 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PROM1O43490 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PROM1O43490 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PROM1O43490 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.76■□□□□ 0.75
PROM1O43490 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PROM1O43490 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.76■□□□□ 0.75
PROM1O43490 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PROM1O43490 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
PROM1O43490 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
PROM1O43490 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
PROM1O43490 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.75■□□□□ 0.75
PROM1O43490 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
PROM1O43490 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
PROM1O43490 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
PROM1O43490 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 KRT18P5-201ENST00000436075 1291 ntBASIC19.75■□□□□ 0.75
PROM1O43490 SLC7A5P2-201ENST00000553010 536 ntBASIC19.75■□□□□ 0.75
PROM1O43490 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 AC120498.10-201ENST00000621827 505 ntBASIC19.75■□□□□ 0.75
PROM1O43490 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
PROM1O43490 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PROM1O43490 KRT16P2-201ENST00000414673 1423 ntBASIC19.75■□□□□ 0.75
PROM1O43490 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.74■□□□□ 0.75
PROM1O43490 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.74■□□□□ 0.75
PROM1O43490 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.74■□□□□ 0.75
PROM1O43490 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.74■□□□□ 0.75
PROM1O43490 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.74■□□□□ 0.75
PROM1O43490 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.74■□□□□ 0.75
PROM1O43490 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.74■□□□□ 0.75
PROM1O43490 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PROM1O43490 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PROM1O43490 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PROM1O43490 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PROM1O43490 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.73■□□□□ 0.75
PROM1O43490 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PROM1O43490 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.73■□□□□ 0.75
PROM1O43490 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.73■□□□□ 0.75
PROM1O43490 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.73■□□□□ 0.75
PROM1O43490 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
PROM1O43490 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PROM1O43490 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PROM1O43490 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
PROM1O43490 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.72■□□□□ 0.75
PROM1O43490 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms