Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 AF201337.1-201ENST00000520239 748 ntBASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 AL591742.1-201ENST00000604433 565 ntBASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA1Q9Y5I3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA1Q9Y5I3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 TSPY6P-201ENST00000448518 926 ntBASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 AC105036.2-201ENST00000569468 176 ntBASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 AC244015.2-201ENST00000616358 1861 ntBASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHA1Q9Y5I3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA1Q9Y5I3 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 AC091799.1-201ENST00000422823 811 ntBASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 GUSBP6-202ENST00000438529 1198 ntBASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 AL162412.1-201ENST00000567129 965 ntBASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.98■■□□□ 1.43
PCDHA1Q9Y5I3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 AC069236.1-201ENST00000604339 616 ntBASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 OR10C1-204ENST00000622521 1039 ntBASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 AC008694.1-202ENST00000636953 945 ntBASIC23.97■■□□□ 1.43
PCDHA1Q9Y5I3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 AL355802.2-201ENST00000402069 882 ntBASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms