Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX3-1Q99801 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX3-1Q99801 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX3-1Q99801 AC073314.1-201ENST00000568729 2216 ntBASIC18.17■□□□□ 0.5
NKX3-1Q99801 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 AC136469.2-201ENST00000623944 1028 ntBASIC18.16■□□□□ 0.5
NKX3-1Q99801 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NKX3-1Q99801 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX3-1Q99801 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX3-1Q99801 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX3-1Q99801 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NKX3-1Q99801 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
NKX3-1Q99801 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
NKX3-1Q99801 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NKX3-1Q99801 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
NKX3-1Q99801 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
NKX3-1Q99801 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NKX3-1Q99801 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.14■□□□□ 0.49
NKX3-1Q99801 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NKX3-1Q99801 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
NKX3-1Q99801 AC110285.6-201ENST00000617652 491 ntBASIC18.14■□□□□ 0.49
NKX3-1Q99801 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.14■□□□□ 0.49
NKX3-1Q99801 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NKX3-1Q99801 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.14■□□□□ 0.49
NKX3-1Q99801 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NKX3-1Q99801 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NKX3-1Q99801 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.14■□□□□ 0.49
NKX3-1Q99801 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.13■□□□□ 0.49
NKX3-1Q99801 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.13■□□□□ 0.49
NKX3-1Q99801 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
NKX3-1Q99801 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 MIR638-201ENST00000385237 100 ntBASIC18.13■□□□□ 0.49
NKX3-1Q99801 PBX2P1-201ENST00000493219 1291 ntBASIC18.13■□□□□ 0.49
NKX3-1Q99801 AL034346.1-201ENST00000568244 1277 ntBASIC18.13■□□□□ 0.49
NKX3-1Q99801 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.13■□□□□ 0.49
NKX3-1Q99801 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.13■□□□□ 0.49
NKX3-1Q99801 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NKX3-1Q99801 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.12■□□□□ 0.49
NKX3-1Q99801 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 AFG3L1P-217ENST00000557444 2447 ntBASIC18.12■□□□□ 0.49
NKX3-1Q99801 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.12■□□□□ 0.49
NKX3-1Q99801 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
NKX3-1Q99801 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
NKX3-1Q99801 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.12■□□□□ 0.49
NKX3-1Q99801 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
NKX3-1Q99801 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.12■□□□□ 0.49
NKX3-1Q99801 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NKX3-1Q99801 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms