Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
VPS39Q96JC1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VPS39Q96JC1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS39Q96JC1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VPS39Q96JC1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VPS39Q96JC1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS39Q96JC1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS39Q96JC1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS39Q96JC1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS39Q96JC1 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS39Q96JC1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS39Q96JC1 RASA4CP-201ENST00000424092 1398 ntBASIC20.92■□□□□ 0.94
VPS39Q96JC1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS39Q96JC1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 AC110285.6-201ENST00000617652 491 ntBASIC20.91■□□□□ 0.94
VPS39Q96JC1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 AC073130.3-201ENST00000624389 2278 ntBASIC20.91■□□□□ 0.94
VPS39Q96JC1 BX005040.4-201ENST00000637145 1518 ntBASIC20.91■□□□□ 0.94
VPS39Q96JC1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS39Q96JC1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS39Q96JC1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
VPS39Q96JC1 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS39Q96JC1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 MIR572-201ENST00000384983 95 ntBASIC20.9■□□□□ 0.94
VPS39Q96JC1 AC091305.1-201ENST00000479476 895 ntBASIC20.9■□□□□ 0.94
VPS39Q96JC1 AF213884.3-201ENST00000563833 479 ntBASIC20.9■□□□□ 0.94
VPS39Q96JC1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.9■□□□□ 0.94
VPS39Q96JC1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS39Q96JC1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS39Q96JC1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS39Q96JC1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
VPS39Q96JC1 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
VPS39Q96JC1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS39Q96JC1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
VPS39Q96JC1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.89■□□□□ 0.94
VPS39Q96JC1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS39Q96JC1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS39Q96JC1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.89■□□□□ 0.93
VPS39Q96JC1 LINC01521-201ENST00000504184 1943 ntBASIC20.89■□□□□ 0.93
VPS39Q96JC1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS39Q96JC1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS39Q96JC1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
VPS39Q96JC1 MIR939-201ENST00000401314 82 ntBASIC20.89■□□□□ 0.93
VPS39Q96JC1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.89■□□□□ 0.93
VPS39Q96JC1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS39Q96JC1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS39Q96JC1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS39Q96JC1 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS39Q96JC1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VPS39Q96JC1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS39Q96JC1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS39Q96JC1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS39Q96JC1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS39Q96JC1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS39Q96JC1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
VPS39Q96JC1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
VPS39Q96JC1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS39Q96JC1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VPS39Q96JC1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS39Q96JC1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS39Q96JC1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
VPS39Q96JC1 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms