Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 AP000997.3-201ENST00000623333 2250 ntBASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC16.68■□□□□ 0.26
CLRN3Q8NCR9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.67■□□□□ 0.26
CLRN3Q8NCR9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 AL133373.2-201ENST00000623187 2828 ntBASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CLRN3Q8NCR9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 AC126177.7-201ENST00000547904 679 ntBASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 LINC01960-201ENST00000563759 1884 ntBASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CLRN3Q8NCR9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CLRN3Q8NCR9 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CLRN3Q8NCR9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 AL049796.1-201ENST00000565336 1766 ntBASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLRN3Q8NCR9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms