Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 AC098934.4-201ENST00000564127 592 ntBASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC60Q8IWA6 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC60Q8IWA6 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC60Q8IWA6 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC60Q8IWA6 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
CCDC60Q8IWA6 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC60Q8IWA6 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC60Q8IWA6 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC60Q8IWA6 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC60Q8IWA6 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC60Q8IWA6 AC008694.1-202ENST00000636953 945 ntBASIC23.32■■□□□ 1.32
CCDC60Q8IWA6 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC60Q8IWA6 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC60Q8IWA6 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 AL512625.2-201ENST00000417533 625 ntBASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 RARRES2P4-201ENST00000514074 484 ntBASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 MKRN4P-201ENST00000444706 1521 ntBASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC60Q8IWA6 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC60Q8IWA6 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 MIPEPP3-201ENST00000412105 444 ntBASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC60Q8IWA6 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.28■■□□□ 1.32
CCDC60Q8IWA6 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 AC069152.1-201ENST00000438030 544 ntBASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.27■■□□□ 1.32
CCDC60Q8IWA6 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms