Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.24■□□□□ 0.99
USP39Q53GS9 ESRRAP1-201ENST00000400596 1257 ntBASIC21.24■□□□□ 0.99
USP39Q53GS9 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
USP39Q53GS9 DUSP5P2-201ENST00000426873 1033 ntBASIC21.24■□□□□ 0.99
USP39Q53GS9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.24■□□□□ 0.99
USP39Q53GS9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.24■□□□□ 0.99
USP39Q53GS9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.24■□□□□ 0.99
USP39Q53GS9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.24■□□□□ 0.99
USP39Q53GS9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.24■□□□□ 0.99
USP39Q53GS9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.24■□□□□ 0.99
USP39Q53GS9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
USP39Q53GS9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
USP39Q53GS9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.24■□□□□ 0.99
USP39Q53GS9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP39Q53GS9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.23■□□□□ 0.99
USP39Q53GS9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
USP39Q53GS9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.23■□□□□ 0.99
USP39Q53GS9 AC083880.1-201ENST00000608266 535 ntBASIC21.23■□□□□ 0.99
USP39Q53GS9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP39Q53GS9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
USP39Q53GS9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.23■□□□□ 0.99
USP39Q53GS9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP39Q53GS9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP39Q53GS9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP39Q53GS9 CLDN5-201ENST00000403084 2357 ntBASIC21.22■□□□□ 0.99
USP39Q53GS9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP39Q53GS9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
USP39Q53GS9 RPS2P52-201ENST00000469610 820 ntBASIC21.22■□□□□ 0.99
USP39Q53GS9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.22■□□□□ 0.99
USP39Q53GS9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.22■□□□□ 0.99
USP39Q53GS9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP39Q53GS9 AL162412.1-201ENST00000567129 965 ntBASIC21.22■□□□□ 0.99
USP39Q53GS9 AL591742.1-201ENST00000604433 565 ntBASIC21.22■□□□□ 0.99
USP39Q53GS9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP39Q53GS9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP39Q53GS9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP39Q53GS9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.22■□□□□ 0.99
USP39Q53GS9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.22■□□□□ 0.99
USP39Q53GS9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP39Q53GS9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
USP39Q53GS9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP39Q53GS9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.21■□□□□ 0.99
USP39Q53GS9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP39Q53GS9 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 MYC-209ENST00000641252 345 ntBASIC21.21■□□□□ 0.99
USP39Q53GS9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP39Q53GS9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.21■□□□□ 0.99
USP39Q53GS9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.21■□□□□ 0.99
USP39Q53GS9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP39Q53GS9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP39Q53GS9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP39Q53GS9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP39Q53GS9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP39Q53GS9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.2■□□□□ 0.98
USP39Q53GS9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.2■□□□□ 0.98
USP39Q53GS9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP39Q53GS9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.2■□□□□ 0.98
USP39Q53GS9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP39Q53GS9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.2■□□□□ 0.98
USP39Q53GS9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
USP39Q53GS9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP39Q53GS9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP39Q53GS9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP39Q53GS9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
USP39Q53GS9 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
USP39Q53GS9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.2■□□□□ 0.98
USP39Q53GS9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 AC087742.1-201ENST00000575880 1738 ntBASIC21.19■□□□□ 0.98
USP39Q53GS9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.19■□□□□ 0.98
USP39Q53GS9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 AC091874.3-201ENST00000512672 1195 ntBASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms