Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 AC016769.1-201ENST00000409132 1010 ntBASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 AC053503.5-201ENST00000601508 636 ntBASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.43■□□□□ 0.86
PTCHD3Q3KNS1 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTCHD3Q3KNS1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 KRT87P-202ENST00000534226 1464 ntBASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTCHD3Q3KNS1 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.4■□□□□ 0.86
PTCHD3Q3KNS1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD3Q3KNS1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.4■□□□□ 0.86
PTCHD3Q3KNS1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD3Q3KNS1 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.4■□□□□ 0.86
PTCHD3Q3KNS1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.4■□□□□ 0.86
PTCHD3Q3KNS1 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTCHD3Q3KNS1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.39■□□□□ 0.86
PTCHD3Q3KNS1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTCHD3Q3KNS1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 KRT19P1-201ENST00000405746 1186 ntBASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 AC006015.1-201ENST00000429970 570 ntBASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 AL049796.1-201ENST00000565336 1766 ntBASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTCHD3Q3KNS1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms