Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS1Q01581 PLK5-205ENST00000642079 1969 ntBASIC20.12■□□□□ 0.81
HMGCS1Q01581 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGCS1Q01581 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS1Q01581 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS1Q01581 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS1Q01581 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 MIR6084-201ENST00000622012 110 ntBASIC20.11■□□□□ 0.81
HMGCS1Q01581 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HMGCS1Q01581 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS1Q01581 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.1■□□□□ 0.81
HMGCS1Q01581 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 TPRG1LP1-201ENST00000598702 760 ntBASIC20.1■□□□□ 0.81
HMGCS1Q01581 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HMGCS1Q01581 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
HMGCS1Q01581 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.09■□□□□ 0.81
HMGCS1Q01581 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGCS1Q01581 AL354811.1-201ENST00000610286 706 ntBASIC20.09■□□□□ 0.81
HMGCS1Q01581 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 LINC01006-201ENST00000333319 2292 ntBASIC20.09■□□□□ 0.81
HMGCS1Q01581 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGCS1Q01581 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGCS1Q01581 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGCS1Q01581 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGCS1Q01581 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGCS1Q01581 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGCS1Q01581 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGCS1Q01581 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.08■□□□□ 0.81
HMGCS1Q01581 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGCS1Q01581 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.08■□□□□ 0.8
HMGCS1Q01581 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.08■□□□□ 0.8
HMGCS1Q01581 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.08■□□□□ 0.8
HMGCS1Q01581 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HMGCS1Q01581 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGCS1Q01581 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGCS1Q01581 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS1Q01581 AC006128.1-201ENST00000624704 1661 ntBASIC20.07■□□□□ 0.8
HMGCS1Q01581 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS1Q01581 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS1Q01581 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS1Q01581 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGCS1Q01581 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGCS1Q01581 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGCS1Q01581 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGCS1Q01581 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HMGCS1Q01581 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms