Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SNCAP37840 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.12■□□□□ 0.33
SNCAP37840 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SNCAP37840 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SNCAP37840 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SNCAP37840 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SNCAP37840 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.12■□□□□ 0.33
SNCAP37840 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.12■□□□□ 0.33
SNCAP37840 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
SNCAP37840 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SNCAP37840 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.11■□□□□ 0.33
SNCAP37840 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.11■□□□□ 0.33
SNCAP37840 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SNCAP37840 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SNCAP37840 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SNCAP37840 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SNCAP37840 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SNCAP37840 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SNCAP37840 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SNCAP37840 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.11■□□□□ 0.33
SNCAP37840 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
SNCAP37840 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.11■□□□□ 0.33
SNCAP37840 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
SNCAP37840 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.11■□□□□ 0.33
SNCAP37840 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SNCAP37840 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SNCAP37840 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.11■□□□□ 0.33
SNCAP37840 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.1■□□□□ 0.33
SNCAP37840 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.1■□□□□ 0.33
SNCAP37840 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SNCAP37840 AC006455.2-201ENST00000429931 906 ntBASIC17.1■□□□□ 0.33
SNCAP37840 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.1■□□□□ 0.33
SNCAP37840 AC104564.3-201ENST00000582367 638 ntBASIC17.1■□□□□ 0.33
SNCAP37840 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SNCAP37840 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.1■□□□□ 0.33
SNCAP37840 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.1■□□□□ 0.33
SNCAP37840 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SNCAP37840 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SNCAP37840 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 AFG3L1P-217ENST00000557444 2447 ntBASIC17.1■□□□□ 0.33
SNCAP37840 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.1■□□□□ 0.33
SNCAP37840 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SNCAP37840 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SNCAP37840 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.09■□□□□ 0.33
SNCAP37840 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.09■□□□□ 0.33
SNCAP37840 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SNCAP37840 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
SNCAP37840 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 SRD5A1P1-201ENST00000442297 786 ntBASIC17.09■□□□□ 0.33
SNCAP37840 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC17.09■□□□□ 0.33
SNCAP37840 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.09■□□□□ 0.33
SNCAP37840 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SNCAP37840 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
SNCAP37840 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SNCAP37840 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SNCAP37840 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SNCAP37840 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SNCAP37840 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SNCAP37840 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SNCAP37840 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SNCAP37840 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.08■□□□□ 0.32
SNCAP37840 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SNCAP37840 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SNCAP37840 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.08■□□□□ 0.32
SNCAP37840 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.08■□□□□ 0.32
SNCAP37840 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SNCAP37840 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms