Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
COL8A1P27658 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.31■□□□□ 0.52
COL8A1P27658 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 AL049637.2-201ENST00000641778 930 ntBASIC18.31■□□□□ 0.52
COL8A1P27658 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL8A1P27658 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL8A1P27658 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL8A1P27658 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
COL8A1P27658 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
COL8A1P27658 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL8A1P27658 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL8A1P27658 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL8A1P27658 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.3■□□□□ 0.52
COL8A1P27658 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL8A1P27658 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.3■□□□□ 0.52
COL8A1P27658 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL8A1P27658 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.3■□□□□ 0.52
COL8A1P27658 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.3■□□□□ 0.52
COL8A1P27658 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.3■□□□□ 0.52
COL8A1P27658 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.3■□□□□ 0.52
COL8A1P27658 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL8A1P27658 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL8A1P27658 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL8A1P27658 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL8A1P27658 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL8A1P27658 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL8A1P27658 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.29■□□□□ 0.52
COL8A1P27658 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.29■□□□□ 0.52
COL8A1P27658 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.29■□□□□ 0.52
COL8A1P27658 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.29■□□□□ 0.52
COL8A1P27658 AL355075.4-201ENST00000554988 638 ntBASIC18.29■□□□□ 0.52
COL8A1P27658 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.29■□□□□ 0.52
COL8A1P27658 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL8A1P27658 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL8A1P27658 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.28■□□□□ 0.52
COL8A1P27658 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.28■□□□□ 0.52
COL8A1P27658 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
COL8A1P27658 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.28■□□□□ 0.52
COL8A1P27658 AL049597.2-201ENST00000565575 961 ntBASIC18.28■□□□□ 0.52
COL8A1P27658 CD177P1-201ENST00000606252 935 ntBASIC18.28■□□□□ 0.52
COL8A1P27658 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL8A1P27658 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.28■□□□□ 0.52
COL8A1P27658 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 AP006587.3-201ENST00000525742 1516 ntBASIC18.28■□□□□ 0.52
COL8A1P27658 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.28■□□□□ 0.52
COL8A1P27658 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL8A1P27658 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 POU5F1P4-201ENST00000413175 1085 ntBASIC18.27■□□□□ 0.52
COL8A1P27658 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
COL8A1P27658 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 MIR4785-201ENST00000585005 73 ntBASIC18.27■□□□□ 0.52
COL8A1P27658 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.27■□□□□ 0.52
COL8A1P27658 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL8A1P27658 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL8A1P27658 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL8A1P27658 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.26■□□□□ 0.51
COL8A1P27658 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.26■□□□□ 0.51
COL8A1P27658 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.26■□□□□ 0.51
COL8A1P27658 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.26■□□□□ 0.51
COL8A1P27658 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.26■□□□□ 0.51
COL8A1P27658 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.26■□□□□ 0.51
COL8A1P27658 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms