Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX3O95343 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.43■□□□□ 0.86
SIX3O95343 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX3O95343 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX3O95343 AL139246.5-201ENST00000606645 996 ntBASIC20.43■□□□□ 0.86
SIX3O95343 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.43■□□□□ 0.86
SIX3O95343 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX3O95343 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX3O95343 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX3O95343 FEM1AP1-201ENST00000431297 1995 ntBASIC20.43■□□□□ 0.86
SIX3O95343 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX3O95343 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.42■□□□□ 0.86
SIX3O95343 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX3O95343 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX3O95343 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SIX3O95343 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX3O95343 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SIX3O95343 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SIX3O95343 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX3O95343 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.42■□□□□ 0.86
SIX3O95343 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX3O95343 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX3O95343 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX3O95343 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX3O95343 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.42■□□□□ 0.86
SIX3O95343 AC006128.1-201ENST00000624704 1661 ntBASIC20.42■□□□□ 0.86
SIX3O95343 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SIX3O95343 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX3O95343 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 LINC01521-201ENST00000504184 1943 ntBASIC20.41■□□□□ 0.86
SIX3O95343 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX3O95343 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.41■□□□□ 0.86
SIX3O95343 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX3O95343 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX3O95343 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
SIX3O95343 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
SIX3O95343 AC092667.1-201ENST00000434301 2586 ntBASIC20.41■□□□□ 0.86
SIX3O95343 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
SIX3O95343 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX3O95343 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.4■□□□□ 0.86
SIX3O95343 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.4■□□□□ 0.86
SIX3O95343 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX3O95343 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.4■□□□□ 0.86
SIX3O95343 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.4■□□□□ 0.86
SIX3O95343 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.4■□□□□ 0.86
SIX3O95343 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.4■□□□□ 0.86
SIX3O95343 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.86
SIX3O95343 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SIX3O95343 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.39■□□□□ 0.86
SIX3O95343 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SIX3O95343 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX3O95343 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX3O95343 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.39■□□□□ 0.85
SIX3O95343 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX3O95343 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.39■□□□□ 0.85
SIX3O95343 TPRG1LP1-201ENST00000598702 760 ntBASIC20.39■□□□□ 0.85
SIX3O95343 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX3O95343 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
SIX3O95343 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
SIX3O95343 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SIX3O95343 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SIX3O95343 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SIX3O95343 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.38■□□□□ 0.85
SIX3O95343 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.38■□□□□ 0.85
SIX3O95343 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.38■□□□□ 0.85
SIX3O95343 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.38■□□□□ 0.85
SIX3O95343 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.38■□□□□ 0.85
SIX3O95343 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.38■□□□□ 0.85
SIX3O95343 AC142381.2-201ENST00000566120 298 ntBASIC20.38■□□□□ 0.85
SIX3O95343 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.38■□□□□ 0.85
SIX3O95343 MIR6084-201ENST00000622012 110 ntBASIC20.38■□□□□ 0.85
SIX3O95343 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.38■□□□□ 0.85
SIX3O95343 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.38■□□□□ 0.85
SIX3O95343 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.38■□□□□ 0.85
SIX3O95343 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.38■□□□□ 0.85
SIX3O95343 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX3O95343 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.37■□□□□ 0.85
SIX3O95343 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX3O95343 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms