Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.31■□□□□ 0.84
UBFD1O14562 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 GABARAPL3-202ENST00000624044 1851 ntBASIC20.31■□□□□ 0.84
UBFD1O14562 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
UBFD1O14562 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.31■□□□□ 0.84
UBFD1O14562 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
UBFD1O14562 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.31■□□□□ 0.84
UBFD1O14562 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBFD1O14562 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBFD1O14562 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.3■□□□□ 0.84
UBFD1O14562 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
UBFD1O14562 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBFD1O14562 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBFD1O14562 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.3■□□□□ 0.84
UBFD1O14562 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBFD1O14562 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBFD1O14562 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBFD1O14562 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
UBFD1O14562 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.3■□□□□ 0.84
UBFD1O14562 AC008406.3-201ENST00000620001 1374 ntBASIC20.3■□□□□ 0.84
UBFD1O14562 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
UBFD1O14562 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
UBFD1O14562 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBFD1O14562 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
UBFD1O14562 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.29■□□□□ 0.84
UBFD1O14562 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
UBFD1O14562 AC019069.1-201ENST00000610008 1333 ntBASIC20.29■□□□□ 0.84
UBFD1O14562 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
UBFD1O14562 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBFD1O14562 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBFD1O14562 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBFD1O14562 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBFD1O14562 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.29■□□□□ 0.84
UBFD1O14562 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBFD1O14562 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
UBFD1O14562 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.28■□□□□ 0.84
UBFD1O14562 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 MIR572-201ENST00000384983 95 ntBASIC20.28■□□□□ 0.84
UBFD1O14562 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.28■□□□□ 0.84
UBFD1O14562 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.28■□□□□ 0.84
UBFD1O14562 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.28■□□□□ 0.84
UBFD1O14562 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
UBFD1O14562 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.28■□□□□ 0.84
UBFD1O14562 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
UBFD1O14562 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBFD1O14562 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
UBFD1O14562 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
UBFD1O14562 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
UBFD1O14562 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 AC027702.1-201ENST00000563810 1770 ntBASIC20.27■□□□□ 0.84
UBFD1O14562 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 EDA-201ENST00000338901 1233 ntBASIC20.27■□□□□ 0.84
UBFD1O14562 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.27■□□□□ 0.84
UBFD1O14562 MIR939-201ENST00000401314 82 ntBASIC20.27■□□□□ 0.84
UBFD1O14562 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.27■□□□□ 0.84
UBFD1O14562 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 AL031432.3-201ENST00000607698 485 ntBASIC20.27■□□□□ 0.84
UBFD1O14562 AC110285.6-201ENST00000617652 491 ntBASIC20.27■□□□□ 0.84
UBFD1O14562 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBFD1O14562 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.27■□□□□ 0.84
UBFD1O14562 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.27■□□□□ 0.83
UBFD1O14562 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
UBFD1O14562 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
UBFD1O14562 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.26■□□□□ 0.83
UBFD1O14562 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
UBFD1O14562 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
UBFD1O14562 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
UBFD1O14562 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
UBFD1O14562 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
UBFD1O14562 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBFD1O14562 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms