Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC28A1O00337 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SLC28A1O00337 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC28A1O00337 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SLC28A1O00337 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC28A1O00337 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.12■□□□□ 0.81
SLC28A1O00337 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.12■□□□□ 0.81
SLC28A1O00337 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.12■□□□□ 0.81
SLC28A1O00337 AC091305.1-201ENST00000479476 895 ntBASIC20.12■□□□□ 0.81
SLC28A1O00337 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.12■□□□□ 0.81
SLC28A1O00337 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.12■□□□□ 0.81
SLC28A1O00337 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SLC28A1O00337 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.12■□□□□ 0.81
SLC28A1O00337 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.12■□□□□ 0.81
SLC28A1O00337 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
SLC28A1O00337 FEM1AP1-201ENST00000431297 1995 ntBASIC20.12■□□□□ 0.81
SLC28A1O00337 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SLC28A1O00337 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.11■□□□□ 0.81
SLC28A1O00337 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC28A1O00337 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.11■□□□□ 0.81
SLC28A1O00337 AC121338.2-201ENST00000622535 1744 ntBASIC20.11■□□□□ 0.81
SLC28A1O00337 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.11■□□□□ 0.81
SLC28A1O00337 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.11■□□□□ 0.81
SLC28A1O00337 AF213884.3-201ENST00000563833 479 ntBASIC20.11■□□□□ 0.81
SLC28A1O00337 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.11■□□□□ 0.81
SLC28A1O00337 AC110285.6-201ENST00000617652 491 ntBASIC20.11■□□□□ 0.81
SLC28A1O00337 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC28A1O00337 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC28A1O00337 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC28A1O00337 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.11■□□□□ 0.81
SLC28A1O00337 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC28A1O00337 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 PLK5-205ENST00000642079 1969 ntBASIC20.1■□□□□ 0.81
SLC28A1O00337 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.1■□□□□ 0.81
SLC28A1O00337 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
SLC28A1O00337 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.1■□□□□ 0.81
SLC28A1O00337 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.1■□□□□ 0.81
SLC28A1O00337 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.1■□□□□ 0.81
SLC28A1O00337 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SLC28A1O00337 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC28A1O00337 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SLC28A1O00337 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.09■□□□□ 0.81
SLC28A1O00337 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.09■□□□□ 0.81
SLC28A1O00337 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.09■□□□□ 0.81
SLC28A1O00337 AL136967.2-201ENST00000623968 743 ntBASIC20.09■□□□□ 0.81
SLC28A1O00337 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.09■□□□□ 0.81
SLC28A1O00337 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC28A1O00337 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.08■□□□□ 0.81
SLC28A1O00337 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.08■□□□□ 0.81
SLC28A1O00337 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SLC28A1O00337 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SLC28A1O00337 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SLC28A1O00337 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.08■□□□□ 0.81
SLC28A1O00337 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.08■□□□□ 0.81
SLC28A1O00337 AC012414.1-201ENST00000556676 535 ntBASIC20.08■□□□□ 0.81
SLC28A1O00337 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.08■□□□□ 0.81
SLC28A1O00337 AC053503.5-201ENST00000601508 636 ntBASIC20.08■□□□□ 0.81
SLC28A1O00337 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.08■□□□□ 0.8
SLC28A1O00337 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC28A1O00337 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC28A1O00337 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.08■□□□□ 0.8
SLC28A1O00337 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC28A1O00337 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC28A1O00337 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC28A1O00337 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.08■□□□□ 0.8
SLC28A1O00337 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.07■□□□□ 0.8
SLC28A1O00337 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC28A1O00337 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC28A1O00337 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
SLC28A1O00337 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.07■□□□□ 0.8
SLC28A1O00337 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SLC28A1O00337 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.07■□□□□ 0.8
SLC28A1O00337 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC28A1O00337 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC28A1O00337 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC28A1O00337 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.07■□□□□ 0.8
SLC28A1O00337 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.07■□□□□ 0.8
SLC28A1O00337 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.07■□□□□ 0.8
SLC28A1O00337 AC073130.3-201ENST00000624389 2278 ntBASIC20.07■□□□□ 0.8
SLC28A1O00337 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SLC28A1O00337 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms