Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SIX2Q9NPC8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 KRT87P-202ENST00000534226 1464 ntBASIC22.54■■□□□ 1.2
SIX2Q9NPC8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SIX2Q9NPC8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 ZNRF2P3-201ENST00000424200 374 ntBASIC22.53■■□□□ 1.2
SIX2Q9NPC8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.53■■□□□ 1.2
SIX2Q9NPC8 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SIX2Q9NPC8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
SIX2Q9NPC8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.52■■□□□ 1.19
SIX2Q9NPC8 LINC02228-203ENST00000641970 1355 ntBASIC22.51■■□□□ 1.19
SIX2Q9NPC8 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SIX2Q9NPC8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 AC006128.1-201ENST00000624704 1661 ntBASIC22.5■■□□□ 1.19
SIX2Q9NPC8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 TERF1P2-201ENST00000583350 1212 ntBASIC22.5■■□□□ 1.19
SIX2Q9NPC8 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC22.5■■□□□ 1.19
SIX2Q9NPC8 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.49■■□□□ 1.19
SIX2Q9NPC8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms