Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.97■□□□□ 0.95
TM9SF3Q9HD45 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 POU5F1P4-201ENST00000413175 1085 ntBASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 AL512625.2-201ENST00000417533 625 ntBASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 RNA5SP413-201ENST00000516373 109 ntBASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.96■□□□□ 0.95
TM9SF3Q9HD45 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.95■□□□□ 0.95
TM9SF3Q9HD45 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
TM9SF3Q9HD45 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
TM9SF3Q9HD45 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 AC092118.2-201ENST00000613495 667 ntBASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TM9SF3Q9HD45 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 AC242852.2-201ENST00000615738 1807 ntBASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 POU5F1P3-201ENST00000428824 1078 ntBASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.94■□□□□ 0.94
TM9SF3Q9HD45 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TM9SF3Q9HD45 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 BX276092.2-201ENST00000417668 665 ntBASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms