Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FAM197Y4-202ENST00000622692 608 ntBASIC20.8■□□□□ 0.92
LIMK1P53667 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LIMK1P53667 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMK1P53667 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK1P53667 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
LIMK1P53667 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK1P53667 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMK1P53667 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.79■□□□□ 0.92
LIMK1P53667 RPPH1-201ENST00000516869 333 ntBASIC20.79■□□□□ 0.92
LIMK1P53667 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.79■□□□□ 0.92
LIMK1P53667 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.79■□□□□ 0.92
LIMK1P53667 AL591742.1-201ENST00000604433 565 ntBASIC20.79■□□□□ 0.92
LIMK1P53667 AC120498.10-201ENST00000621827 505 ntBASIC20.79■□□□□ 0.92
LIMK1P53667 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.78■□□□□ 0.92
LIMK1P53667 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.78■□□□□ 0.92
LIMK1P53667 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.78■□□□□ 0.92
LIMK1P53667 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.78■□□□□ 0.92
LIMK1P53667 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.78■□□□□ 0.92
LIMK1P53667 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.78■□□□□ 0.92
LIMK1P53667 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.78■□□□□ 0.92
LIMK1P53667 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
LIMK1P53667 AC008403.3-201ENST00000598924 454 ntBASIC20.78■□□□□ 0.92
LIMK1P53667 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
LIMK1P53667 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMK1P53667 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
LIMK1P53667 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMK1P53667 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.77■□□□□ 0.92
LIMK1P53667 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMK1P53667 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMK1P53667 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMK1P53667 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
LIMK1P53667 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.77■□□□□ 0.92
LIMK1P53667 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMK1P53667 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMK1P53667 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LIMK1P53667 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.77■□□□□ 0.92
LIMK1P53667 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIMK1P53667 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIMK1P53667 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIMK1P53667 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LIMK1P53667 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
LIMK1P53667 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.76■□□□□ 0.91
LIMK1P53667 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
LIMK1P53667 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMK1P53667 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.76■□□□□ 0.91
LIMK1P53667 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.76■□□□□ 0.91
LIMK1P53667 SNORA78-201ENST00000459373 127 ntBASIC20.76■□□□□ 0.91
LIMK1P53667 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.76■□□□□ 0.91
LIMK1P53667 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.76■□□□□ 0.91
LIMK1P53667 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMK1P53667 Z99916.2-201ENST00000604037 246 ntBASIC20.76■□□□□ 0.91
LIMK1P53667 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
LIMK1P53667 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LIMK1P53667 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIMK1P53667 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.75■□□□□ 0.91
LIMK1P53667 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.75■□□□□ 0.91
LIMK1P53667 AC060766.5-201ENST00000590539 871 ntBASIC20.75■□□□□ 0.91
LIMK1P53667 CYP2T3P-201ENST00000601990 817 ntBASIC20.75■□□□□ 0.91
LIMK1P53667 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.75■□□□□ 0.91
LIMK1P53667 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIMK1P53667 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.74■□□□□ 0.91
LIMK1P53667 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIMK1P53667 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.74■□□□□ 0.91
LIMK1P53667 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.74■□□□□ 0.91
LIMK1P53667 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
LIMK1P53667 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIMK1P53667 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMK1P53667 LSM12P1-201ENST00000411836 588 ntBASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms