Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.36■□□□□ 0.85
PDX1P52945 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDX1P52945 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
PDX1P52945 AC008687.6-201ENST00000596318 630 ntBASIC20.36■□□□□ 0.85
PDX1P52945 AC016405.3-201ENST00000607710 860 ntBASIC20.36■□□□□ 0.85
PDX1P52945 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDX1P52945 OR10C1-204ENST00000622521 1039 ntBASIC20.36■□□□□ 0.85
PDX1P52945 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.36■□□□□ 0.85
PDX1P52945 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.36■□□□□ 0.85
PDX1P52945 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDX1P52945 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDX1P52945 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDX1P52945 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PDX1P52945 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PDX1P52945 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDX1P52945 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDX1P52945 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.35■□□□□ 0.85
PDX1P52945 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
PDX1P52945 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.35■□□□□ 0.85
PDX1P52945 POU5F1P3-201ENST00000428824 1078 ntBASIC20.35■□□□□ 0.85
PDX1P52945 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
PDX1P52945 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDX1P52945 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.35■□□□□ 0.85
PDX1P52945 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PDX1P52945 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.35■□□□□ 0.85
PDX1P52945 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDX1P52945 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDX1P52945 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.35■□□□□ 0.85
PDX1P52945 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDX1P52945 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
PDX1P52945 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.35■□□□□ 0.85
PDX1P52945 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.34■□□□□ 0.85
PDX1P52945 RNA5SP413-201ENST00000516373 109 ntBASIC20.34■□□□□ 0.85
PDX1P52945 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.34■□□□□ 0.85
PDX1P52945 AC092118.2-201ENST00000613495 667 ntBASIC20.34■□□□□ 0.85
PDX1P52945 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDX1P52945 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDX1P52945 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.33■□□□□ 0.85
PDX1P52945 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDX1P52945 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDX1P52945 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDX1P52945 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.33■□□□□ 0.84
PDX1P52945 LINC00565-201ENST00000562710 2331 ntBASIC20.33■□□□□ 0.84
PDX1P52945 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDX1P52945 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDX1P52945 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDX1P52945 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.33■□□□□ 0.84
PDX1P52945 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDX1P52945 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PDX1P52945 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.32■□□□□ 0.84
PDX1P52945 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.32■□□□□ 0.84
PDX1P52945 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.32■□□□□ 0.84
PDX1P52945 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PDX1P52945 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDX1P52945 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.32■□□□□ 0.84
PDX1P52945 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.32■□□□□ 0.84
PDX1P52945 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
PDX1P52945 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
PDX1P52945 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 AL512625.2-201ENST00000417533 625 ntBASIC20.31■□□□□ 0.84
PDX1P52945 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.31■□□□□ 0.84
PDX1P52945 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PDX1P52945 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
PDX1P52945 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
PDX1P52945 AC083880.1-201ENST00000608266 535 ntBASIC20.31■□□□□ 0.84
PDX1P52945 ITM2C-210ENST00000620962 501 ntBASIC20.31■□□□□ 0.84
PDX1P52945 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.31■□□□□ 0.84
PDX1P52945 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PDX1P52945 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDX1P52945 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms