Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 KRT18P20-201ENST00000548986 1279 ntBASIC21.85■■□□□ 1.09
PTPN9P43378 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 AL137060.1-201ENST00000618151 2648 ntBASIC21.85■■□□□ 1.09
PTPN9P43378 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.85■■□□□ 1.09
PTPN9P43378 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTPN9P43378 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.85■■□□□ 1.09
PTPN9P43378 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.84■■□□□ 1.09
PTPN9P43378 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.84■■□□□ 1.09
PTPN9P43378 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
PTPN9P43378 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PTPN9P43378 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PTPN9P43378 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
PTPN9P43378 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTPN9P43378 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN9P43378 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.83■■□□□ 1.09
PTPN9P43378 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN9P43378 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN9P43378 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
PTPN9P43378 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN9P43378 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN9P43378 AC120498.10-201ENST00000621827 505 ntBASIC21.83■■□□□ 1.09
PTPN9P43378 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTPN9P43378 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.83■■□□□ 1.08
PTPN9P43378 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
PTPN9P43378 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN9P43378 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN9P43378 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN9P43378 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN9P43378 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.82■■□□□ 1.08
PTPN9P43378 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN9P43378 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN9P43378 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN9P43378 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
PTPN9P43378 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.82■■□□□ 1.08
PTPN9P43378 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN9P43378 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN9P43378 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTPN9P43378 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
PTPN9P43378 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN9P43378 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN9P43378 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN9P43378 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.81■■□□□ 1.08
PTPN9P43378 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.81■■□□□ 1.08
PTPN9P43378 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN9P43378 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
PTPN9P43378 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.81■■□□□ 1.08
PTPN9P43378 KRT18P5-201ENST00000436075 1291 ntBASIC21.81■■□□□ 1.08
PTPN9P43378 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.81■■□□□ 1.08
PTPN9P43378 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PTPN9P43378 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
PTPN9P43378 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.8■■□□□ 1.08
PTPN9P43378 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.8■■□□□ 1.08
PTPN9P43378 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN9P43378 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN9P43378 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN9P43378 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN9P43378 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN9P43378 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.8■■□□□ 1.08
PTPN9P43378 SLC7A5P2-201ENST00000553010 536 ntBASIC21.8■■□□□ 1.08
PTPN9P43378 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.8■■□□□ 1.08
PTPN9P43378 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN9P43378 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.8■■□□□ 1.08
PTPN9P43378 MIR5787-201ENST00000611784 55 ntBASIC21.8■■□□□ 1.08
PTPN9P43378 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.8■■□□□ 1.08
PTPN9P43378 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
PTPN9P43378 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.8■■□□□ 1.08
PTPN9P43378 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PTPN9P43378 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.79■■□□□ 1.08
PTPN9P43378 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.79■■□□□ 1.08
PTPN9P43378 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.79■■□□□ 1.08
PTPN9P43378 SLC7A5P1-201ENST00000568957 537 ntBASIC21.79■■□□□ 1.08
PTPN9P43378 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.79■■□□□ 1.08
PTPN9P43378 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PTPN9P43378 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.79■■□□□ 1.08
PTPN9P43378 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN9P43378 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PTPN9P43378 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.78■■□□□ 1.08
PTPN9P43378 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN9P43378 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.78■■□□□ 1.08
PTPN9P43378 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms