Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PCNAP12004 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.36■□□□□ 0.85
PCNAP12004 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.36■□□□□ 0.85
PCNAP12004 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PCNAP12004 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.36■□□□□ 0.85
PCNAP12004 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.36■□□□□ 0.85
PCNAP12004 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.36■□□□□ 0.85
PCNAP12004 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.36■□□□□ 0.85
PCNAP12004 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCNAP12004 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.35■□□□□ 0.85
PCNAP12004 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.35■□□□□ 0.85
PCNAP12004 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PCNAP12004 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.35■□□□□ 0.85
PCNAP12004 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.35■□□□□ 0.85
PCNAP12004 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCNAP12004 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.34■□□□□ 0.85
PCNAP12004 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.34■□□□□ 0.85
PCNAP12004 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
PCNAP12004 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.34■□□□□ 0.85
PCNAP12004 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.34■□□□□ 0.85
PCNAP12004 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCNAP12004 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
PCNAP12004 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCNAP12004 AF106564.1-201ENST00000607058 2553 ntBASIC20.33■□□□□ 0.85
PCNAP12004 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCNAP12004 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.33■□□□□ 0.85
PCNAP12004 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.33■□□□□ 0.85
PCNAP12004 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.85
PCNAP12004 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.33■□□□□ 0.85
PCNAP12004 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
PCNAP12004 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCNAP12004 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCNAP12004 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.33■□□□□ 0.84
PCNAP12004 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCNAP12004 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PCNAP12004 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
PCNAP12004 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PCNAP12004 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.32■□□□□ 0.84
PCNAP12004 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.32■□□□□ 0.84
PCNAP12004 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PCNAP12004 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PCNAP12004 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCNAP12004 FEM1AP4-201ENST00000443167 1987 ntBASIC20.32■□□□□ 0.84
PCNAP12004 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.32■□□□□ 0.84
PCNAP12004 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
PCNAP12004 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PCNAP12004 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PCNAP12004 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.31■□□□□ 0.84
PCNAP12004 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.31■□□□□ 0.84
PCNAP12004 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.31■□□□□ 0.84
PCNAP12004 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PCNAP12004 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
PCNAP12004 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCNAP12004 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.31■□□□□ 0.84
PCNAP12004 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.3■□□□□ 0.84
PCNAP12004 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
PCNAP12004 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms