Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DQB2P05538 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DQB2P05538 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HLA-DQB2P05538 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DQB2P05538 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.3■■□□□ 1
HLA-DQB2P05538 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DQB2P05538 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DQB2P05538 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DQB2P05538 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
HLA-DQB2P05538 KRT18P5-201ENST00000436075 1291 ntBASIC21.3■■□□□ 1
HLA-DQB2P05538 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.3■■□□□ 1
HLA-DQB2P05538 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.3■■□□□ 1
HLA-DQB2P05538 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.3■■□□□ 1
HLA-DQB2P05538 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HLA-DQB2P05538 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
HLA-DQB2P05538 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.29■■□□□ 1
HLA-DQB2P05538 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DQB2P05538 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.29■■□□□ 1
HLA-DQB2P05538 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 POU5F1P4-201ENST00000413175 1085 ntBASIC21.29■■□□□ 1
HLA-DQB2P05538 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
HLA-DQB2P05538 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.29■■□□□ 1
HLA-DQB2P05538 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.29■■□□□ 1
HLA-DQB2P05538 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
HLA-DQB2P05538 AL049796.1-201ENST00000565336 1766 ntBASIC21.28■■□□□ 1
HLA-DQB2P05538 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.28■■□□□ 1
HLA-DQB2P05538 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DQB2P05538 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.28■■□□□ 1
HLA-DQB2P05538 MIR935-201ENST00000401179 91 ntBASIC21.28■■□□□ 1
HLA-DQB2P05538 KRT19P1-201ENST00000405746 1186 ntBASIC21.28■■□□□ 1
HLA-DQB2P05538 SLC7A5P2-201ENST00000553010 536 ntBASIC21.28■■□□□ 1
HLA-DQB2P05538 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.28■■□□□ 1
HLA-DQB2P05538 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DQB2P05538 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.28■■□□□ 1
HLA-DQB2P05538 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.28■■□□□ 1
HLA-DQB2P05538 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.28■■□□□ 1
HLA-DQB2P05538 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.28■■□□□ 1
HLA-DQB2P05538 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DQB2P05538 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DQB2P05538 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.27■■□□□ 1
HLA-DQB2P05538 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.27■■□□□ 1
HLA-DQB2P05538 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.27■■□□□ 1
HLA-DQB2P05538 MIR5787-201ENST00000611784 55 ntBASIC21.27■■□□□ 1
HLA-DQB2P05538 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HLA-DQB2P05538 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
HLA-DQB2P05538 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.27■□□□□ 0.99
HLA-DQB2P05538 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HLA-DQB2P05538 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.27■□□□□ 0.99
HLA-DQB2P05538 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 AL162430.1-201ENST00000480705 870 ntBASIC21.26■□□□□ 0.99
HLA-DQB2P05538 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.26■□□□□ 0.99
HLA-DQB2P05538 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.25■□□□□ 0.99
HLA-DQB2P05538 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.24■□□□□ 0.99
HLA-DQB2P05538 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.24■□□□□ 0.99
HLA-DQB2P05538 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.24■□□□□ 0.99
HLA-DQB2P05538 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms