Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
RBFOX3A6NFN3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RBFOX3A6NFN3 AC138932.1-201ENST00000534164 6830 ntBASIC16.56■□□□□ 0.24
RBFOX3A6NFN3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RBFOX3A6NFN3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RBFOX3A6NFN3 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 AC116562.4-201ENST00000641316 2276 ntBASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 LONRF2P2-201ENST00000439212 571 ntBASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 AC133552.2-201ENST00000619106 1032 ntBASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 AC009831.1-201ENST00000580420 1582 ntBASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RBFOX3A6NFN3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 PLK5-205ENST00000642079 1969 ntBASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 IDNK-203ENST00000405990 629 ntTSL 2 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 DUX4L4-201ENST00000566884 1269 ntBASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RBFOX3A6NFN3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 ABHD17AP3-201ENST00000503096 1137 ntBASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.52■□□□□ 0.24
RBFOX3A6NFN3 AC026471.1-201ENST00000564629 3026 ntBASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RBFOX3A6NFN3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RBFOX3A6NFN3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RBFOX3A6NFN3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms