Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 MIR572-201ENST00000384983 95 ntBASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 AL355001.2-201ENST00000620617 1191 ntBASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 AL136967.2-201ENST00000623968 743 ntBASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 AC006128.1-201ENST00000624704 1661 ntBASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TCRBV7S3A2A0A539 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TCRBV7S3A2A0A539 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.33■■□□□ 1
TCRBV7S3A2A0A539 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.33■■□□□ 1
TCRBV7S3A2A0A539 RASA4CP-201ENST00000424092 1398 ntBASIC21.33■■□□□ 1
TCRBV7S3A2A0A539 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.33■■□□□ 1
TCRBV7S3A2A0A539 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
TCRBV7S3A2A0A539 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.33■■□□□ 1
TCRBV7S3A2A0A539 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TCRBV7S3A2A0A539 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TCRBV7S3A2A0A539 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 AC073314.1-201ENST00000568729 2216 ntBASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
TCRBV7S3A2A0A539 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms